Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0500 and Shewana3_0501 are separated by 41 nucleotides Shewana3_0501 and Shewana3_0502 are separated by 260 nucleotides
Shewana3_0500: Shewana3_0500 - peptidase M13 (RefSeq), at 583,428 to 585,560
_0500
Shewana3_0501: Shewana3_0501 - fatty acid cistrans isomerase (RefSeq), at 585,602 to 587,995
_0501
Shewana3_0502: Shewana3_0502 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 588,256 to 593,202
_0502
Position (kb) 585
586
587
588 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 584.607 kb on + strand, within Shewana3_0500 at 584.665 kb on + strand, within Shewana3_0500 at 584.729 kb on + strand, within Shewana3_0500 at 584.737 kb on - strand, within Shewana3_0500 at 584.786 kb on - strand, within Shewana3_0500 at 584.916 kb on + strand, within Shewana3_0500 at 584.924 kb on + strand, within Shewana3_0500 at 585.173 kb on + strand, within Shewana3_0500 at 585.390 kb on + strand at 585.447 kb on + strand at 585.447 kb on + strand at 585.455 kb on - strand at 585.529 kb on - strand at 585.532 kb on - strand at 585.698 kb on - strand at 585.765 kb on + strand at 585.773 kb on - strand at 585.794 kb on + strand at 585.820 kb on - strand at 585.934 kb on - strand, within Shewana3_0501 at 586.017 kb on + strand, within Shewana3_0501 at 586.148 kb on - strand, within Shewana3_0501 at 586.148 kb on - strand, within Shewana3_0501 at 586.163 kb on - strand, within Shewana3_0501 at 586.178 kb on - strand, within Shewana3_0501 at 586.227 kb on - strand, within Shewana3_0501 at 586.366 kb on + strand, within Shewana3_0501 at 586.528 kb on + strand, within Shewana3_0501 at 586.528 kb on + strand, within Shewana3_0501 at 586.661 kb on - strand, within Shewana3_0501 at 586.729 kb on + strand, within Shewana3_0501 at 586.737 kb on - strand, within Shewana3_0501 at 586.771 kb on + strand, within Shewana3_0501 at 586.824 kb on - strand, within Shewana3_0501 at 586.851 kb on - strand, within Shewana3_0501 at 586.884 kb on - strand, within Shewana3_0501 at 586.991 kb on - strand, within Shewana3_0501 at 587.239 kb on - strand, within Shewana3_0501 at 587.335 kb on + strand, within Shewana3_0501 at 587.335 kb on + strand, within Shewana3_0501 at 587.343 kb on - strand, within Shewana3_0501 at 587.524 kb on + strand, within Shewana3_0501 at 587.570 kb on - strand, within Shewana3_0501 at 587.942 kb on - strand at 587.956 kb on - strand at 588.004 kb on - strand at 588.316 kb on - strand at 588.344 kb on - strand at 588.412 kb on - strand at 588.436 kb on - strand at 588.443 kb on - strand at 588.477 kb on - strand at 588.543 kb on + strand at 588.719 kb on - strand at 588.877 kb on - strand, within Shewana3_0502 at 588.921 kb on - strand, within Shewana3_0502 at 588.961 kb on + strand, within Shewana3_0502 at 588.968 kb on - strand, within Shewana3_0502 at 588.969 kb on - strand, within Shewana3_0502
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 584,607 + Shewana3_0500 0.55 +0.0 584,665 + Shewana3_0500 0.58 +3.4 584,729 + Shewana3_0500 0.61 +0.3 584,737 - Shewana3_0500 0.61 -0.1 584,786 - Shewana3_0500 0.64 -0.8 584,916 + Shewana3_0500 0.70 -1.3 584,924 + Shewana3_0500 0.70 -1.3 585,173 + Shewana3_0500 0.82 +0.4 585,390 + +0.5 585,447 + -1.9 585,447 + -0.4 585,455 - -0.4 585,529 - +0.7 585,532 - +0.4 585,698 - -1.4 585,765 + -1.0 585,773 - -0.9 585,794 + +0.3 585,820 - +0.9 585,934 - Shewana3_0501 0.14 +0.3 586,017 + Shewana3_0501 0.17 -1.5 586,148 - Shewana3_0501 0.23 +0.9 586,148 - Shewana3_0501 0.23 +1.8 586,163 - Shewana3_0501 0.23 +1.7 586,178 - Shewana3_0501 0.24 -1.4 586,227 - Shewana3_0501 0.26 -1.3 586,366 + Shewana3_0501 0.32 +0.5 586,528 + Shewana3_0501 0.39 +0.4 586,528 + Shewana3_0501 0.39 +0.1 586,661 - Shewana3_0501 0.44 -0.9 586,729 + Shewana3_0501 0.47 +0.2 586,737 - Shewana3_0501 0.47 -0.8 586,771 + Shewana3_0501 0.49 +1.9 586,824 - Shewana3_0501 0.51 +0.3 586,851 - Shewana3_0501 0.52 +0.7 586,884 - Shewana3_0501 0.54 -2.3 586,991 - Shewana3_0501 0.58 +2.3 587,239 - Shewana3_0501 0.68 +2.0 587,335 + Shewana3_0501 0.72 +0.7 587,335 + Shewana3_0501 0.72 -1.0 587,343 - Shewana3_0501 0.73 +1.3 587,524 + Shewana3_0501 0.80 -1.1 587,570 - Shewana3_0501 0.82 -0.8 587,942 - -0.1 587,956 - -1.1 588,004 - +0.7 588,316 - +0.1 588,344 - +0.2 588,412 - +0.1 588,436 - +0.1 588,443 - +0.2 588,477 - -1.0 588,543 + -1.2 588,719 - +0.6 588,877 - Shewana3_0502 0.13 -1.5 588,921 - Shewana3_0502 0.13 +0.2 588,961 + Shewana3_0502 0.14 +0.2 588,968 - Shewana3_0502 0.14 -1.9 588,969 - Shewana3_0502 0.14 -0.4
Or see this region's nucleotide sequence