Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0462 and Shewana3_0463 are separated by 30 nucleotides Shewana3_0463 and Shewana3_0464 are separated by 291 nucleotides Shewana3_0464 and Shewana3_0465 are separated by 655 nucleotides
Shewana3_0462: Shewana3_0462 - protein of unknown function, zinc metallopeptidase putative (RefSeq), at 536,825 to 537,703
_0462
Shewana3_0463: Shewana3_0463 - NUDIX hydrolase (RefSeq), at 537,734 to 538,141
_0463
Shewana3_0464: Shewana3_0464 - hypothetical protein (RefSeq), at 538,433 to 538,771
_0464
Shewana3_0465: Shewana3_0465 - hypothetical protein (RefSeq), at 539,427 to 540,026
_0465
Position (kb) 538
539 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 537.508 kb on + strand, within Shewana3_0462 at 537.516 kb on - strand, within Shewana3_0462 at 537.601 kb on - strand, within Shewana3_0462 at 537.606 kb on + strand, within Shewana3_0462 at 537.607 kb on - strand, within Shewana3_0462 at 537.721 kb on - strand at 537.765 kb on + strand at 537.805 kb on + strand, within Shewana3_0463 at 537.805 kb on + strand, within Shewana3_0463 at 537.805 kb on + strand, within Shewana3_0463 at 537.852 kb on + strand, within Shewana3_0463 at 538.026 kb on + strand, within Shewana3_0463 at 538.034 kb on - strand, within Shewana3_0463 at 538.065 kb on + strand, within Shewana3_0463 at 538.065 kb on + strand, within Shewana3_0463 at 538.073 kb on - strand, within Shewana3_0463 at 538.073 kb on - strand, within Shewana3_0463 at 538.143 kb on - strand at 538.173 kb on + strand at 538.233 kb on + strand at 538.233 kb on + strand at 538.233 kb on + strand at 538.242 kb on - strand at 538.326 kb on + strand at 538.505 kb on + strand, within Shewana3_0464 at 538.530 kb on + strand, within Shewana3_0464 at 538.530 kb on + strand, within Shewana3_0464 at 538.530 kb on + strand, within Shewana3_0464 at 538.530 kb on + strand, within Shewana3_0464 at 538.530 kb on + strand, within Shewana3_0464 at 538.538 kb on - strand, within Shewana3_0464 at 538.538 kb on - strand, within Shewana3_0464 at 538.538 kb on - strand, within Shewana3_0464 at 538.538 kb on - strand, within Shewana3_0464 at 538.538 kb on - strand, within Shewana3_0464 at 538.538 kb on - strand, within Shewana3_0464 at 538.572 kb on + strand, within Shewana3_0464 at 538.572 kb on - strand, within Shewana3_0464 at 538.578 kb on + strand, within Shewana3_0464 at 538.647 kb on + strand, within Shewana3_0464 at 538.807 kb on + strand at 538.863 kb on - strand at 538.978 kb on + strand at 538.995 kb on + strand at 539.043 kb on + strand at 539.043 kb on + strand at 539.043 kb on + strand at 539.043 kb on + strand at 539.043 kb on + strand at 539.044 kb on + strand at 539.052 kb on - strand at 539.052 kb on - strand at 539.119 kb on - strand at 539.318 kb on + strand at 539.416 kb on - strand at 539.437 kb on - strand at 539.438 kb on - strand at 539.440 kb on + strand at 539.440 kb on + strand at 539.464 kb on - strand at 539.497 kb on + strand, within Shewana3_0465 at 539.497 kb on + strand, within Shewana3_0465 at 539.505 kb on - strand, within Shewana3_0465 at 539.507 kb on + strand, within Shewana3_0465 at 539.616 kb on - strand, within Shewana3_0465 at 539.618 kb on + strand, within Shewana3_0465 at 539.640 kb on - strand, within Shewana3_0465 at 539.640 kb on - strand, within Shewana3_0465 at 539.640 kb on - strand, within Shewana3_0465 at 539.650 kb on + strand, within Shewana3_0465 at 539.652 kb on + strand, within Shewana3_0465 at 539.660 kb on - strand, within Shewana3_0465 at 539.676 kb on + strand, within Shewana3_0465 at 539.759 kb on - strand, within Shewana3_0465
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 537,508 + Shewana3_0462 0.78 -0.4 537,516 - Shewana3_0462 0.79 +0.6 537,601 - Shewana3_0462 0.88 +3.3 537,606 + Shewana3_0462 0.89 -0.0 537,607 - Shewana3_0462 0.89 +0.5 537,721 - -1.4 537,765 + +0.6 537,805 + Shewana3_0463 0.17 +0.9 537,805 + Shewana3_0463 0.17 -0.8 537,805 + Shewana3_0463 0.17 +0.6 537,852 + Shewana3_0463 0.29 -0.5 538,026 + Shewana3_0463 0.72 -1.6 538,034 - Shewana3_0463 0.74 +0.6 538,065 + Shewana3_0463 0.81 +2.1 538,065 + Shewana3_0463 0.81 -1.6 538,073 - Shewana3_0463 0.83 -1.3 538,073 - Shewana3_0463 0.83 +0.4 538,143 - -0.9 538,173 + +0.5 538,233 + -1.6 538,233 + +0.2 538,233 + +0.2 538,242 - -1.7 538,326 + -0.3 538,505 + Shewana3_0464 0.21 -1.2 538,530 + Shewana3_0464 0.29 +0.4 538,530 + Shewana3_0464 0.29 -0.8 538,530 + Shewana3_0464 0.29 -0.5 538,530 + Shewana3_0464 0.29 +0.2 538,530 + Shewana3_0464 0.29 -1.1 538,538 - Shewana3_0464 0.31 -1.9 538,538 - Shewana3_0464 0.31 -1.7 538,538 - Shewana3_0464 0.31 -0.1 538,538 - Shewana3_0464 0.31 +0.4 538,538 - Shewana3_0464 0.31 +2.0 538,538 - Shewana3_0464 0.31 -3.1 538,572 + Shewana3_0464 0.41 +0.2 538,572 - Shewana3_0464 0.41 -1.5 538,578 + Shewana3_0464 0.43 -0.4 538,647 + Shewana3_0464 0.63 +1.7 538,807 + -1.8 538,863 - +0.3 538,978 + +0.6 538,995 + -0.3 539,043 + +0.6 539,043 + -1.4 539,043 + +0.0 539,043 + +0.9 539,043 + +0.9 539,044 + +0.6 539,052 - -0.8 539,052 - -1.4 539,119 - -2.0 539,318 + +2.7 539,416 - -0.0 539,437 - +0.4 539,438 - +1.1 539,440 + +0.7 539,440 + -0.7 539,464 - -1.0 539,497 + Shewana3_0465 0.12 +0.8 539,497 + Shewana3_0465 0.12 +0.0 539,505 - Shewana3_0465 0.13 +0.7 539,507 + Shewana3_0465 0.13 -0.6 539,616 - Shewana3_0465 0.32 +1.4 539,618 + Shewana3_0465 0.32 +0.1 539,640 - Shewana3_0465 0.35 -1.5 539,640 - Shewana3_0465 0.35 +2.7 539,640 - Shewana3_0465 0.35 +0.5 539,650 + Shewana3_0465 0.37 +0.6 539,652 + Shewana3_0465 0.38 +0.0 539,660 - Shewana3_0465 0.39 +0.5 539,676 + Shewana3_0465 0.41 +0.6 539,759 - Shewana3_0465 0.55 +0.5
Or see this region's nucleotide sequence