Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0459 and Shewana3_0460 are separated by 193 nucleotides Shewana3_0460 and Shewana3_0461 are separated by 11 nucleotides Shewana3_0461 and Shewana3_0462 are separated by 47 nucleotides Shewana3_0462 and Shewana3_0463 are separated by 30 nucleotides Shewana3_0463 and Shewana3_0464 are separated by 291 nucleotides
Shewana3_0459: Shewana3_0459 - protein of unknown function DUF853, NPT hydrolase putative (RefSeq), at 534,420 to 535,913
_0459
Shewana3_0460: Shewana3_0460 - hypothetical protein (RefSeq), at 536,107 to 536,340
_0460
Shewana3_0461: Shewana3_0461 - hypothetical protein (RefSeq), at 536,352 to 536,777
_0461
Shewana3_0462: Shewana3_0462 - protein of unknown function, zinc metallopeptidase putative (RefSeq), at 536,825 to 537,703
_0462
Shewana3_0463: Shewana3_0463 - NUDIX hydrolase (RefSeq), at 537,734 to 538,141
_0463
Shewana3_0464: Shewana3_0464 - hypothetical protein (RefSeq), at 538,433 to 538,771
_0464
Position (kb) 536
537
538 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 535.907 kb on - strand at 535.961 kb on + strand at 535.969 kb on - strand at 535.969 kb on - strand at 536.050 kb on - strand at 536.051 kb on - strand at 536.056 kb on - strand at 536.154 kb on - strand, within Shewana3_0460 at 536.245 kb on + strand, within Shewana3_0460 at 536.253 kb on - strand, within Shewana3_0460 at 536.253 kb on - strand, within Shewana3_0460 at 536.316 kb on - strand, within Shewana3_0460 at 536.351 kb on + strand at 536.375 kb on + strand at 536.414 kb on - strand, within Shewana3_0461 at 536.813 kb on - strand at 536.881 kb on + strand at 536.881 kb on - strand at 537.015 kb on + strand, within Shewana3_0462 at 537.015 kb on + strand, within Shewana3_0462 at 537.207 kb on + strand, within Shewana3_0462 at 537.240 kb on + strand, within Shewana3_0462 at 537.356 kb on + strand, within Shewana3_0462 at 537.386 kb on - strand, within Shewana3_0462 at 537.508 kb on + strand, within Shewana3_0462 at 537.516 kb on - strand, within Shewana3_0462 at 537.601 kb on - strand, within Shewana3_0462 at 537.606 kb on + strand, within Shewana3_0462 at 537.607 kb on - strand, within Shewana3_0462 at 537.721 kb on - strand at 537.765 kb on + strand at 537.805 kb on + strand, within Shewana3_0463 at 537.805 kb on + strand, within Shewana3_0463 at 537.805 kb on + strand, within Shewana3_0463 at 537.852 kb on + strand, within Shewana3_0463 at 538.026 kb on + strand, within Shewana3_0463 at 538.034 kb on - strand, within Shewana3_0463 at 538.065 kb on + strand, within Shewana3_0463 at 538.065 kb on + strand, within Shewana3_0463 at 538.073 kb on - strand, within Shewana3_0463 at 538.073 kb on - strand, within Shewana3_0463 at 538.143 kb on - strand at 538.173 kb on + strand at 538.233 kb on + strand at 538.233 kb on + strand at 538.233 kb on + strand at 538.242 kb on - strand at 538.326 kb on + strand at 538.505 kb on + strand, within Shewana3_0464 at 538.530 kb on + strand, within Shewana3_0464 at 538.530 kb on + strand, within Shewana3_0464 at 538.530 kb on + strand, within Shewana3_0464 at 538.530 kb on + strand, within Shewana3_0464 at 538.530 kb on + strand, within Shewana3_0464 at 538.538 kb on - strand, within Shewana3_0464 at 538.538 kb on - strand, within Shewana3_0464 at 538.538 kb on - strand, within Shewana3_0464 at 538.538 kb on - strand, within Shewana3_0464 at 538.538 kb on - strand, within Shewana3_0464 at 538.538 kb on - strand, within Shewana3_0464 at 538.572 kb on + strand, within Shewana3_0464 at 538.572 kb on - strand, within Shewana3_0464 at 538.578 kb on + strand, within Shewana3_0464 at 538.647 kb on + strand, within Shewana3_0464
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 535,907 - +0.3 535,961 + -1.3 535,969 - +2.2 535,969 - -1.3 536,050 - +2.6 536,051 - +0.4 536,056 - -1.8 536,154 - Shewana3_0460 0.20 +0.5 536,245 + Shewana3_0460 0.59 +0.5 536,253 - Shewana3_0460 0.62 -0.5 536,253 - Shewana3_0460 0.62 -0.9 536,316 - Shewana3_0460 0.89 -1.0 536,351 + -1.5 536,375 + +0.7 536,414 - Shewana3_0461 0.15 +0.9 536,813 - -0.6 536,881 + +0.6 536,881 - +0.2 537,015 + Shewana3_0462 0.22 -1.2 537,015 + Shewana3_0462 0.22 +2.5 537,207 + Shewana3_0462 0.43 -1.2 537,240 + Shewana3_0462 0.47 +0.2 537,356 + Shewana3_0462 0.60 -0.2 537,386 - Shewana3_0462 0.64 +0.4 537,508 + Shewana3_0462 0.78 -0.4 537,516 - Shewana3_0462 0.79 +0.6 537,601 - Shewana3_0462 0.88 +3.3 537,606 + Shewana3_0462 0.89 -0.0 537,607 - Shewana3_0462 0.89 +0.5 537,721 - -1.4 537,765 + +0.6 537,805 + Shewana3_0463 0.17 +0.9 537,805 + Shewana3_0463 0.17 -0.8 537,805 + Shewana3_0463 0.17 +0.6 537,852 + Shewana3_0463 0.29 -0.5 538,026 + Shewana3_0463 0.72 -1.6 538,034 - Shewana3_0463 0.74 +0.6 538,065 + Shewana3_0463 0.81 +2.1 538,065 + Shewana3_0463 0.81 -1.6 538,073 - Shewana3_0463 0.83 -1.3 538,073 - Shewana3_0463 0.83 +0.4 538,143 - -0.9 538,173 + +0.5 538,233 + -1.6 538,233 + +0.2 538,233 + +0.2 538,242 - -1.7 538,326 + -0.3 538,505 + Shewana3_0464 0.21 -1.2 538,530 + Shewana3_0464 0.29 +0.4 538,530 + Shewana3_0464 0.29 -0.8 538,530 + Shewana3_0464 0.29 -0.5 538,530 + Shewana3_0464 0.29 +0.2 538,530 + Shewana3_0464 0.29 -1.1 538,538 - Shewana3_0464 0.31 -1.9 538,538 - Shewana3_0464 0.31 -1.7 538,538 - Shewana3_0464 0.31 -0.1 538,538 - Shewana3_0464 0.31 +0.4 538,538 - Shewana3_0464 0.31 +2.0 538,538 - Shewana3_0464 0.31 -3.1 538,572 + Shewana3_0464 0.41 +0.2 538,572 - Shewana3_0464 0.41 -1.5 538,578 + Shewana3_0464 0.43 -0.4 538,647 + Shewana3_0464 0.63 +1.7
Or see this region's nucleotide sequence