Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0376 and Shewana3_0377 are separated by 8 nucleotides Shewana3_0377 and Shewana3_0378 are separated by 18 nucleotides Shewana3_0378 and Shewana3_0379 overlap by 4 nucleotides
Shewana3_0376: Shewana3_0376 - diguanylate cyclase/phosphodiesterase (RefSeq), at 417,068 to 418,987
_0376
Shewana3_0377: Shewana3_0377 - hypothetical protein (RefSeq), at 418,996 to 419,703
_0377
Shewana3_0378: Shewana3_0378 - OmpA/MotB domain-containing protein (RefSeq), at 419,722 to 420,330
_0378
Shewana3_0379: Shewana3_0379 - TolC family type I secretion outer membrane protein (RefSeq), at 420,327 to 421,742
_0379
Position (kb) 418
419
420 Strain fitness (log2 ratio) -1
0
1
2
3 at 418.143 kb on + strand, within Shewana3_0376 at 418.213 kb on + strand, within Shewana3_0376 at 418.226 kb on - strand, within Shewana3_0376 at 418.244 kb on - strand, within Shewana3_0376 at 418.256 kb on + strand, within Shewana3_0376 at 418.263 kb on - strand, within Shewana3_0376 at 418.344 kb on - strand, within Shewana3_0376 at 418.456 kb on - strand, within Shewana3_0376 at 418.472 kb on + strand, within Shewana3_0376 at 418.644 kb on + strand, within Shewana3_0376 at 418.644 kb on + strand, within Shewana3_0376 at 418.711 kb on - strand, within Shewana3_0376 at 418.859 kb on + strand at 418.897 kb on + strand at 418.979 kb on - strand at 418.996 kb on - strand at 419.047 kb on - strand at 419.077 kb on + strand, within Shewana3_0377 at 419.190 kb on + strand, within Shewana3_0377 at 419.195 kb on + strand, within Shewana3_0377 at 419.199 kb on - strand, within Shewana3_0377 at 419.219 kb on + strand, within Shewana3_0377 at 419.273 kb on + strand, within Shewana3_0377 at 419.318 kb on - strand, within Shewana3_0377 at 419.558 kb on - strand, within Shewana3_0377 at 419.560 kb on - strand, within Shewana3_0377 at 419.685 kb on + strand at 419.763 kb on + strand at 419.888 kb on - strand, within Shewana3_0378 at 420.071 kb on + strand, within Shewana3_0378 at 420.154 kb on - strand, within Shewana3_0378 at 420.201 kb on - strand, within Shewana3_0378 at 420.386 kb on + strand at 420.646 kb on + strand, within Shewana3_0379 at 420.692 kb on + strand, within Shewana3_0379
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 418,143 + Shewana3_0376 0.56 +0.9 418,213 + Shewana3_0376 0.60 +1.2 418,226 - Shewana3_0376 0.60 +0.3 418,244 - Shewana3_0376 0.61 -1.7 418,256 + Shewana3_0376 0.62 +0.2 418,263 - Shewana3_0376 0.62 -0.9 418,344 - Shewana3_0376 0.66 -1.0 418,456 - Shewana3_0376 0.72 -1.2 418,472 + Shewana3_0376 0.73 +0.5 418,644 + Shewana3_0376 0.82 +2.8 418,644 + Shewana3_0376 0.82 +0.1 418,711 - Shewana3_0376 0.86 +0.9 418,859 + +1.0 418,897 + +1.9 418,979 - +0.8 418,996 - +0.5 419,047 - -0.7 419,077 + Shewana3_0377 0.11 +0.4 419,190 + Shewana3_0377 0.27 +1.0 419,195 + Shewana3_0377 0.28 +0.8 419,199 - Shewana3_0377 0.29 -0.4 419,219 + Shewana3_0377 0.31 +1.8 419,273 + Shewana3_0377 0.39 -0.7 419,318 - Shewana3_0377 0.45 +2.4 419,558 - Shewana3_0377 0.79 +0.6 419,560 - Shewana3_0377 0.80 +1.3 419,685 + -0.0 419,763 + +0.6 419,888 - Shewana3_0378 0.27 +1.2 420,071 + Shewana3_0378 0.57 +0.4 420,154 - Shewana3_0378 0.71 -1.5 420,201 - Shewana3_0378 0.79 +1.3 420,386 + +1.6 420,646 + Shewana3_0379 0.23 +0.9 420,692 + Shewana3_0379 0.26 +1.2
Or see this region's nucleotide sequence