Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0284 and Shewana3_0285 are separated by 119 nucleotides Shewana3_0285 and Shewana3_0286 are separated by 70 nucleotides Shewana3_0286 and Shewana3_0287 are separated by 303 nucleotides Shewana3_0287 and Shewana3_0288 are separated by 12 nucleotides
Shewana3_0284: Shewana3_0284 - pseudouridine synthase Rlu family protein (RefSeq), at 317,636 to 318,325
_0284
Shewana3_0285: Shewana3_0285 - hypothetical protein (RefSeq), at 318,445 to 318,612
_0285
Shewana3_0286: Shewana3_0286 - TonB-dependent receptor (RefSeq), at 318,683 to 320,854
_0286
Shewana3_0287: Shewana3_0287 - hypothetical protein (RefSeq), at 321,158 to 321,349
_0287
Shewana3_0288: Shewana3_0288 - peptidase M23B (RefSeq), at 321,362 to 321,874
_0288
Position (kb) 318
319
320
321 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 317.696 kb on + strand at 317.793 kb on + strand, within Shewana3_0284 at 317.793 kb on + strand, within Shewana3_0284 at 317.793 kb on + strand, within Shewana3_0284 at 317.793 kb on + strand, within Shewana3_0284 at 317.801 kb on - strand, within Shewana3_0284 at 317.801 kb on - strand, within Shewana3_0284 at 317.801 kb on - strand, within Shewana3_0284 at 317.859 kb on + strand, within Shewana3_0284 at 317.917 kb on + strand, within Shewana3_0284 at 318.015 kb on + strand, within Shewana3_0284 at 318.093 kb on + strand, within Shewana3_0284 at 318.129 kb on + strand, within Shewana3_0284 at 318.137 kb on - strand, within Shewana3_0284 at 318.236 kb on - strand, within Shewana3_0284 at 318.246 kb on - strand, within Shewana3_0284 at 318.294 kb on - strand at 318.523 kb on + strand, within Shewana3_0285 at 318.587 kb on + strand, within Shewana3_0285 at 318.587 kb on + strand, within Shewana3_0285 at 318.587 kb on + strand, within Shewana3_0285 at 318.691 kb on + strand at 318.817 kb on - strand at 318.830 kb on - strand at 318.886 kb on + strand at 318.966 kb on + strand, within Shewana3_0286 at 319.081 kb on + strand, within Shewana3_0286 at 319.094 kb on + strand, within Shewana3_0286 at 319.172 kb on + strand, within Shewana3_0286 at 319.180 kb on - strand, within Shewana3_0286 at 319.447 kb on - strand, within Shewana3_0286 at 319.502 kb on - strand, within Shewana3_0286 at 319.526 kb on - strand, within Shewana3_0286 at 319.615 kb on - strand, within Shewana3_0286 at 319.627 kb on - strand, within Shewana3_0286 at 319.874 kb on + strand, within Shewana3_0286 at 319.874 kb on + strand, within Shewana3_0286 at 319.926 kb on - strand, within Shewana3_0286 at 319.948 kb on + strand, within Shewana3_0286 at 319.952 kb on - strand, within Shewana3_0286 at 320.076 kb on + strand, within Shewana3_0286 at 320.260 kb on + strand, within Shewana3_0286 at 320.415 kb on - strand, within Shewana3_0286 at 320.493 kb on + strand, within Shewana3_0286 at 320.493 kb on + strand, within Shewana3_0286 at 320.568 kb on + strand, within Shewana3_0286 at 320.793 kb on + strand at 320.859 kb on - strand at 320.878 kb on - strand at 320.898 kb on - strand at 321.113 kb on + strand at 321.306 kb on + strand, within Shewana3_0287 at 321.357 kb on + strand at 321.441 kb on + strand, within Shewana3_0288 at 321.444 kb on - strand, within Shewana3_0288 at 321.449 kb on - strand, within Shewana3_0288 at 321.456 kb on - strand, within Shewana3_0288 at 321.462 kb on + strand, within Shewana3_0288 at 321.468 kb on - strand, within Shewana3_0288 at 321.516 kb on + strand, within Shewana3_0288 at 321.526 kb on - strand, within Shewana3_0288 at 321.566 kb on - strand, within Shewana3_0288 at 321.653 kb on - strand, within Shewana3_0288 at 321.724 kb on + strand, within Shewana3_0288
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 317,696 + +0.1 317,793 + Shewana3_0284 0.23 -1.8 317,793 + Shewana3_0284 0.23 -0.2 317,793 + Shewana3_0284 0.23 -1.3 317,793 + Shewana3_0284 0.23 +0.7 317,801 - Shewana3_0284 0.24 -0.8 317,801 - Shewana3_0284 0.24 +0.7 317,801 - Shewana3_0284 0.24 -0.2 317,859 + Shewana3_0284 0.32 -1.1 317,917 + Shewana3_0284 0.41 -0.6 318,015 + Shewana3_0284 0.55 +0.4 318,093 + Shewana3_0284 0.66 -1.1 318,129 + Shewana3_0284 0.71 +0.8 318,137 - Shewana3_0284 0.73 +0.1 318,236 - Shewana3_0284 0.87 -1.1 318,246 - Shewana3_0284 0.88 +0.3 318,294 - -1.2 318,523 + Shewana3_0285 0.46 +3.3 318,587 + Shewana3_0285 0.85 -1.3 318,587 + Shewana3_0285 0.85 -1.0 318,587 + Shewana3_0285 0.85 +0.8 318,691 + -0.5 318,817 - -1.4 318,830 - +0.5 318,886 + -0.4 318,966 + Shewana3_0286 0.13 -0.1 319,081 + Shewana3_0286 0.18 -1.4 319,094 + Shewana3_0286 0.19 -0.0 319,172 + Shewana3_0286 0.23 -0.1 319,180 - Shewana3_0286 0.23 -1.4 319,447 - Shewana3_0286 0.35 +0.5 319,502 - Shewana3_0286 0.38 +0.0 319,526 - Shewana3_0286 0.39 +0.3 319,615 - Shewana3_0286 0.43 +1.2 319,627 - Shewana3_0286 0.43 -1.1 319,874 + Shewana3_0286 0.55 -2.0 319,874 + Shewana3_0286 0.55 -1.4 319,926 - Shewana3_0286 0.57 -1.7 319,948 + Shewana3_0286 0.58 +0.3 319,952 - Shewana3_0286 0.58 -1.2 320,076 + Shewana3_0286 0.64 -2.7 320,260 + Shewana3_0286 0.73 +0.9 320,415 - Shewana3_0286 0.80 +3.2 320,493 + Shewana3_0286 0.83 -0.7 320,493 + Shewana3_0286 0.83 -2.2 320,568 + Shewana3_0286 0.87 +0.4 320,793 + -1.4 320,859 - +2.1 320,878 - -0.6 320,898 - -0.9 321,113 + -0.8 321,306 + Shewana3_0287 0.77 -1.4 321,357 + +0.3 321,441 + Shewana3_0288 0.15 +0.3 321,444 - Shewana3_0288 0.16 -2.1 321,449 - Shewana3_0288 0.17 +0.4 321,456 - Shewana3_0288 0.18 +0.5 321,462 + Shewana3_0288 0.19 +0.1 321,468 - Shewana3_0288 0.21 -1.9 321,516 + Shewana3_0288 0.30 +2.1 321,526 - Shewana3_0288 0.32 +0.6 321,566 - Shewana3_0288 0.40 +0.7 321,653 - Shewana3_0288 0.57 -1.6 321,724 + Shewana3_0288 0.71 +0.9
Or see this region's nucleotide sequence