Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0177

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0176 and Shewana3_0177 are separated by 96 nucleotidesShewana3_0177 and Shewana3_0178 are separated by 122 nucleotidesShewana3_0178 and Shewana3_0179 are separated by 69 nucleotides Shewana3_0176: Shewana3_0176 - selenophosphate synthase (RefSeq), at 209,620 to 210,678 _0176 Shewana3_0177: Shewana3_0177 - Delta-9 acyl-phospholipid desaturase (RefSeq), at 210,775 to 211,902 _0177 Shewana3_0178: Shewana3_0178 - DNA-binding transcriptional repressor FabR (RefSeq), at 212,025 to 212,639 _0178 Shewana3_0179: Shewana3_0179 - tRNA (uracil-5-)-methyltransferase (RefSeq), at 212,709 to 213,806 _0179 Position (kb) 210 211 212Strain fitness (log2 ratio) -2 -1 0 1 2at 209.838 kb on - strand, within Shewana3_0176at 209.870 kb on - strand, within Shewana3_0176at 209.926 kb on - strand, within Shewana3_0176at 209.933 kb on - strand, within Shewana3_0176at 209.965 kb on + strand, within Shewana3_0176at 209.973 kb on - strand, within Shewana3_0176at 209.999 kb on + strand, within Shewana3_0176at 210.035 kb on + strand, within Shewana3_0176at 210.239 kb on - strand, within Shewana3_0176at 210.277 kb on + strand, within Shewana3_0176at 210.277 kb on + strand, within Shewana3_0176at 210.277 kb on + strand, within Shewana3_0176at 210.340 kb on + strand, within Shewana3_0176at 210.638 kb on + strandat 210.689 kb on - strandat 210.777 kb on + strandat 210.789 kb on + strandat 210.826 kb on - strandat 210.988 kb on - strand, within Shewana3_0177at 211.072 kb on - strand, within Shewana3_0177at 211.102 kb on - strand, within Shewana3_0177at 211.108 kb on - strand, within Shewana3_0177at 211.147 kb on - strand, within Shewana3_0177at 211.196 kb on + strand, within Shewana3_0177at 211.247 kb on + strand, within Shewana3_0177at 211.247 kb on + strand, within Shewana3_0177at 211.255 kb on - strand, within Shewana3_0177at 211.270 kb on - strand, within Shewana3_0177at 211.270 kb on - strand, within Shewana3_0177at 211.386 kb on + strand, within Shewana3_0177at 211.429 kb on - strand, within Shewana3_0177at 211.467 kb on + strand, within Shewana3_0177at 211.518 kb on + strand, within Shewana3_0177at 211.679 kb on + strand, within Shewana3_0177at 211.712 kb on - strand, within Shewana3_0177at 211.752 kb on + strand, within Shewana3_0177at 211.815 kb on + strandat 211.820 kb on + strandat 211.851 kb on + strandat 211.859 kb on - strandat 212.040 kb on - strandat 212.090 kb on + strand, within Shewana3_0178at 212.090 kb on + strand, within Shewana3_0178at 212.090 kb on + strand, within Shewana3_0178at 212.090 kb on + strand, within Shewana3_0178at 212.123 kb on - strand, within Shewana3_0178at 212.195 kb on + strand, within Shewana3_0178at 212.230 kb on + strand, within Shewana3_0178at 212.230 kb on + strand, within Shewana3_0178at 212.230 kb on + strand, within Shewana3_0178at 212.230 kb on + strand, within Shewana3_0178at 212.238 kb on - strand, within Shewana3_0178at 212.238 kb on - strand, within Shewana3_0178at 212.238 kb on - strand, within Shewana3_0178at 212.238 kb on - strand, within Shewana3_0178at 212.238 kb on - strand, within Shewana3_0178at 212.271 kb on + strand, within Shewana3_0178at 212.391 kb on + strand, within Shewana3_0178at 212.461 kb on + strand, within Shewana3_0178at 212.461 kb on + strand, within Shewana3_0178at 212.461 kb on + strand, within Shewana3_0178at 212.469 kb on - strand, within Shewana3_0178at 212.471 kb on + strand, within Shewana3_0178at 212.491 kb on - strand, within Shewana3_0178at 212.499 kb on + strand, within Shewana3_0178at 212.600 kb on - strandat 212.618 kb on + strandat 212.734 kb on - strandat 212.757 kb on - strandat 212.757 kb on - strandat 212.806 kb on - strandat 212.875 kb on + strand, within Shewana3_0179at 212.892 kb on + strand, within Shewana3_0179

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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209,838 - Shewana3_0176 0.21 +1.8
209,870 - Shewana3_0176 0.24 -1.1
209,926 - Shewana3_0176 0.29 +1.7
209,933 - Shewana3_0176 0.30 -1.1
209,965 + Shewana3_0176 0.33 +0.1
209,973 - Shewana3_0176 0.33 -1.1
209,999 + Shewana3_0176 0.36 +2.3
210,035 + Shewana3_0176 0.39 +0.1
210,239 - Shewana3_0176 0.58 +0.4
210,277 + Shewana3_0176 0.62 +0.4
210,277 + Shewana3_0176 0.62 -2.0
210,277 + Shewana3_0176 0.62 -1.5
210,340 + Shewana3_0176 0.68 +0.1
210,638 + +2.2
210,689 - -1.7
210,777 + +0.8
210,789 + +0.1
210,826 - -0.5
210,988 - Shewana3_0177 0.19 +0.1
211,072 - Shewana3_0177 0.26 +0.5
211,102 - Shewana3_0177 0.29 -1.4
211,108 - Shewana3_0177 0.30 -1.6
211,147 - Shewana3_0177 0.33 +0.4
211,196 + Shewana3_0177 0.37 +0.4
211,247 + Shewana3_0177 0.42 -1.2
211,247 + Shewana3_0177 0.42 +0.0
211,255 - Shewana3_0177 0.43 -1.0
211,270 - Shewana3_0177 0.44 +0.4
211,270 - Shewana3_0177 0.44 +0.7
211,386 + Shewana3_0177 0.54 +2.0
211,429 - Shewana3_0177 0.58 -0.4
211,467 + Shewana3_0177 0.61 +0.0
211,518 + Shewana3_0177 0.66 -0.7
211,679 + Shewana3_0177 0.80 -1.6
211,712 - Shewana3_0177 0.83 -0.6
211,752 + Shewana3_0177 0.87 -1.4
211,815 + +0.7
211,820 + +2.1
211,851 + +0.8
211,859 - +0.6
212,040 - +1.4
212,090 + Shewana3_0178 0.11 -1.8
212,090 + Shewana3_0178 0.11 -1.4
212,090 + Shewana3_0178 0.11 +0.8
212,090 + Shewana3_0178 0.11 +0.3
212,123 - Shewana3_0178 0.16 -1.4
212,195 + Shewana3_0178 0.28 +0.7
212,230 + Shewana3_0178 0.33 +0.6
212,230 + Shewana3_0178 0.33 +0.6
212,230 + Shewana3_0178 0.33 +0.7
212,230 + Shewana3_0178 0.33 +0.5
212,238 - Shewana3_0178 0.35 -1.7
212,238 - Shewana3_0178 0.35 +0.9
212,238 - Shewana3_0178 0.35 +0.9
212,238 - Shewana3_0178 0.35 -0.7
212,238 - Shewana3_0178 0.35 +0.4
212,271 + Shewana3_0178 0.40 +2.3
212,391 + Shewana3_0178 0.60 +0.7
212,461 + Shewana3_0178 0.71 +2.3
212,461 + Shewana3_0178 0.71 +0.6
212,461 + Shewana3_0178 0.71 -0.8
212,469 - Shewana3_0178 0.72 +0.7
212,471 + Shewana3_0178 0.73 -1.4
212,491 - Shewana3_0178 0.76 +0.9
212,499 + Shewana3_0178 0.77 -1.0
212,600 - +1.4
212,618 + -1.0
212,734 - +2.1
212,757 - -0.9
212,757 - +0.7
212,806 - -1.2
212,875 + Shewana3_0179 0.15 +0.5
212,892 + Shewana3_0179 0.17 +0.6

Or see this region's nucleotide sequence