Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0133

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0131 and Shewana3_0132 are separated by 247 nucleotidesShewana3_0132 and Shewana3_0133 are separated by 75 nucleotidesShewana3_0133 and ribB are separated by 363 nucleotides Shewana3_0131: Shewana3_0131 - molybdopterin molybdochelatase (RefSeq), at 146,271 to 147,605 _0131 Shewana3_0132: Shewana3_0132 - Ferritin, Dps family protein (RefSeq), at 147,853 to 148,389 _0132 Shewana3_0133: Shewana3_0133 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 148,465 to 151,698 _0133 Shewana3_0134: ribB - 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 152,062 to 152,715 ribB Position (kb) 148 149 150 151 152Strain fitness (log2 ratio) -2 -1 0 1 2 3at 147.528 kb on - strandat 147.581 kb on + strandat 147.592 kb on + strandat 147.602 kb on + strandat 147.661 kb on - strandat 147.949 kb on + strand, within Shewana3_0132at 148.042 kb on + strand, within Shewana3_0132at 148.218 kb on + strand, within Shewana3_0132at 148.646 kb on + strandat 148.690 kb on - strandat 148.716 kb on - strandat 148.804 kb on - strand, within Shewana3_0133at 148.861 kb on + strand, within Shewana3_0133at 148.931 kb on + strand, within Shewana3_0133at 148.945 kb on + strand, within Shewana3_0133at 148.945 kb on - strand, within Shewana3_0133at 148.975 kb on + strand, within Shewana3_0133at 149.027 kb on + strand, within Shewana3_0133at 149.104 kb on + strand, within Shewana3_0133at 149.132 kb on + strand, within Shewana3_0133at 149.145 kb on - strand, within Shewana3_0133at 149.150 kb on - strand, within Shewana3_0133at 149.150 kb on - strand, within Shewana3_0133at 149.150 kb on - strand, within Shewana3_0133at 149.234 kb on + strand, within Shewana3_0133at 149.277 kb on - strand, within Shewana3_0133at 149.462 kb on - strand, within Shewana3_0133at 149.518 kb on - strand, within Shewana3_0133at 149.526 kb on - strand, within Shewana3_0133at 149.703 kb on + strand, within Shewana3_0133at 149.768 kb on - strand, within Shewana3_0133at 149.786 kb on - strand, within Shewana3_0133at 149.786 kb on - strand, within Shewana3_0133at 149.880 kb on + strand, within Shewana3_0133at 149.888 kb on - strand, within Shewana3_0133at 149.915 kb on + strand, within Shewana3_0133at 150.177 kb on + strand, within Shewana3_0133at 150.394 kb on + strand, within Shewana3_0133at 150.432 kb on + strand, within Shewana3_0133at 150.521 kb on - strand, within Shewana3_0133at 150.531 kb on - strand, within Shewana3_0133at 150.558 kb on - strand, within Shewana3_0133at 150.651 kb on + strand, within Shewana3_0133at 150.685 kb on + strand, within Shewana3_0133at 150.685 kb on + strand, within Shewana3_0133at 150.693 kb on - strand, within Shewana3_0133at 150.693 kb on - strand, within Shewana3_0133at 150.760 kb on - strand, within Shewana3_0133at 150.760 kb on - strand, within Shewana3_0133at 150.921 kb on + strand, within Shewana3_0133at 150.949 kb on + strand, within Shewana3_0133at 150.957 kb on - strand, within Shewana3_0133at 150.957 kb on - strand, within Shewana3_0133at 150.957 kb on - strand, within Shewana3_0133at 150.957 kb on - strand, within Shewana3_0133at 151.013 kb on - strand, within Shewana3_0133at 151.018 kb on + strand, within Shewana3_0133at 151.200 kb on + strand, within Shewana3_0133at 151.220 kb on + strand, within Shewana3_0133at 151.286 kb on + strand, within Shewana3_0133at 151.316 kb on - strand, within Shewana3_0133at 151.324 kb on - strand, within Shewana3_0133at 151.324 kb on - strand, within Shewana3_0133at 151.324 kb on - strand, within Shewana3_0133at 151.324 kb on - strand, within Shewana3_0133at 151.360 kb on + strand, within Shewana3_0133at 151.368 kb on - strand, within Shewana3_0133at 151.381 kb on + strandat 151.381 kb on + strandat 151.389 kb on - strandat 151.389 kb on - strandat 151.424 kb on + strandat 151.431 kb on + strandat 151.475 kb on + strandat 151.524 kb on + strandat 151.673 kb on - strandat 152.074 kb on + strandat 152.114 kb on - strandat 152.123 kb on + strandat 152.131 kb on - strand, within ribBat 152.131 kb on - strand, within ribBat 152.177 kb on - strand, within ribBat 152.305 kb on + strand, within ribBat 152.342 kb on - strand, within ribBat 152.486 kb on - strand, within ribB

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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147,528 - -1.5
147,581 + +1.1
147,592 + -0.5
147,602 + +1.8
147,661 - +0.6
147,949 + Shewana3_0132 0.18 +0.5
148,042 + Shewana3_0132 0.35 +2.3
148,218 + Shewana3_0132 0.68 +2.6
148,646 + -1.6
148,690 - +0.3
148,716 - -0.0
148,804 - Shewana3_0133 0.10 -0.5
148,861 + Shewana3_0133 0.12 -0.3
148,931 + Shewana3_0133 0.14 +2.0
148,945 + Shewana3_0133 0.15 +0.4
148,945 - Shewana3_0133 0.15 -0.3
148,975 + Shewana3_0133 0.16 +2.3
149,027 + Shewana3_0133 0.17 +2.2
149,104 + Shewana3_0133 0.20 -0.2
149,132 + Shewana3_0133 0.21 -1.1
149,145 - Shewana3_0133 0.21 +0.0
149,150 - Shewana3_0133 0.21 -0.7
149,150 - Shewana3_0133 0.21 +0.9
149,150 - Shewana3_0133 0.21 +0.7
149,234 + Shewana3_0133 0.24 +0.2
149,277 - Shewana3_0133 0.25 -0.2
149,462 - Shewana3_0133 0.31 -1.1
149,518 - Shewana3_0133 0.33 -1.4
149,526 - Shewana3_0133 0.33 +2.1
149,703 + Shewana3_0133 0.38 +0.9
149,768 - Shewana3_0133 0.40 +0.2
149,786 - Shewana3_0133 0.41 -0.6
149,786 - Shewana3_0133 0.41 -1.2
149,880 + Shewana3_0133 0.44 +0.5
149,888 - Shewana3_0133 0.44 +0.0
149,915 + Shewana3_0133 0.45 -1.6
150,177 + Shewana3_0133 0.53 -1.4
150,394 + Shewana3_0133 0.60 +1.8
150,432 + Shewana3_0133 0.61 +0.4
150,521 - Shewana3_0133 0.64 +0.2
150,531 - Shewana3_0133 0.64 +0.1
150,558 - Shewana3_0133 0.65 +1.0
150,651 + Shewana3_0133 0.68 +0.3
150,685 + Shewana3_0133 0.69 -0.2
150,685 + Shewana3_0133 0.69 +0.3
150,693 - Shewana3_0133 0.69 +2.8
150,693 - Shewana3_0133 0.69 +0.4
150,760 - Shewana3_0133 0.71 +0.8
150,760 - Shewana3_0133 0.71 +0.4
150,921 + Shewana3_0133 0.76 +0.1
150,949 + Shewana3_0133 0.77 +0.6
150,957 - Shewana3_0133 0.77 +2.0
150,957 - Shewana3_0133 0.77 +0.4
150,957 - Shewana3_0133 0.77 -0.9
150,957 - Shewana3_0133 0.77 +0.9
151,013 - Shewana3_0133 0.79 +0.4
151,018 + Shewana3_0133 0.79 -1.2
151,200 + Shewana3_0133 0.85 -1.8
151,220 + Shewana3_0133 0.85 -2.0
151,286 + Shewana3_0133 0.87 +0.7
151,316 - Shewana3_0133 0.88 +0.6
151,324 - Shewana3_0133 0.88 +0.2
151,324 - Shewana3_0133 0.88 +0.4
151,324 - Shewana3_0133 0.88 -0.5
151,324 - Shewana3_0133 0.88 -1.0
151,360 + Shewana3_0133 0.90 +0.5
151,368 - Shewana3_0133 0.90 +0.2
151,381 + -1.1
151,381 + -1.0
151,389 - -1.0
151,389 - -1.5
151,424 + +0.3
151,431 + -0.8
151,475 + -1.4
151,524 + -1.0
151,673 - -1.3
152,074 + +0.3
152,114 - +0.5
152,123 + +0.7
152,131 - ribB Shewana3_0134 0.11 +0.6
152,131 - ribB Shewana3_0134 0.11 -1.0
152,177 - ribB Shewana3_0134 0.18 +0.6
152,305 + ribB Shewana3_0134 0.37 +0.2
152,342 - ribB Shewana3_0134 0.43 +0.7
152,486 - ribB Shewana3_0134 0.65 +0.3

Or see this region's nucleotide sequence