Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0081 and Shewana3_0082 are separated by 107 nucleotides Shewana3_0082 and Shewana3_0083 are separated by 118 nucleotides Shewana3_0083 and Shewana3_0084 are separated by 20 nucleotides
Shewana3_0081: Shewana3_0081 - MORN repeat-containing protein (RefSeq), at 94,414 to 96,903
_0081
Shewana3_0082: Shewana3_0082 - thioesterase superfamily protein (RefSeq), at 97,011 to 97,421
_0082
Shewana3_0083: Shewana3_0083 - HPP family protein (RefSeq), at 97,540 to 98,088
_0083
Shewana3_0084: Shewana3_0084 - hypothetical protein (RefSeq), at 98,109 to 98,372
_0084
Position (kb) 97
98 Strain fitness (log2 ratio) -2
-1
0
1
2 at 96.046 kb on - strand, within Shewana3_0081 at 96.056 kb on - strand, within Shewana3_0081 at 96.080 kb on - strand, within Shewana3_0081 at 96.095 kb on - strand, within Shewana3_0081 at 96.188 kb on + strand, within Shewana3_0081 at 96.214 kb on + strand, within Shewana3_0081 at 96.434 kb on - strand, within Shewana3_0081 at 96.434 kb on - strand, within Shewana3_0081 at 96.492 kb on + strand, within Shewana3_0081 at 96.586 kb on + strand, within Shewana3_0081 at 96.676 kb on - strand at 96.836 kb on - strand at 96.836 kb on - strand at 96.975 kb on + strand at 96.983 kb on - strand at 97.065 kb on + strand, within Shewana3_0082 at 97.111 kb on - strand, within Shewana3_0082 at 97.267 kb on + strand, within Shewana3_0082 at 97.341 kb on + strand, within Shewana3_0082 at 97.346 kb on - strand, within Shewana3_0082 at 97.392 kb on - strand at 97.393 kb on + strand at 97.406 kb on + strand at 97.424 kb on - strand at 97.575 kb on + strand at 97.575 kb on + strand at 97.688 kb on + strand, within Shewana3_0083 at 97.726 kb on + strand, within Shewana3_0083 at 97.726 kb on + strand, within Shewana3_0083 at 97.734 kb on - strand, within Shewana3_0083 at 97.789 kb on + strand, within Shewana3_0083 at 97.948 kb on + strand, within Shewana3_0083 at 98.072 kb on - strand at 98.175 kb on + strand, within Shewana3_0084 at 98.175 kb on + strand, within Shewana3_0084
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 96,046 - Shewana3_0081 0.66 +0.5 96,056 - Shewana3_0081 0.66 -0.8 96,080 - Shewana3_0081 0.67 +0.2 96,095 - Shewana3_0081 0.68 -2.4 96,188 + Shewana3_0081 0.71 +2.1 96,214 + Shewana3_0081 0.72 +0.4 96,434 - Shewana3_0081 0.81 -0.7 96,434 - Shewana3_0081 0.81 -0.9 96,492 + Shewana3_0081 0.83 -0.8 96,586 + Shewana3_0081 0.87 +1.5 96,676 - -1.2 96,836 - +0.3 96,836 - +0.2 96,975 + +0.1 96,983 - -1.3 97,065 + Shewana3_0082 0.13 +0.6 97,111 - Shewana3_0082 0.24 +0.2 97,267 + Shewana3_0082 0.62 -1.7 97,341 + Shewana3_0082 0.80 -1.2 97,346 - Shewana3_0082 0.82 -0.7 97,392 - +0.4 97,393 + -0.1 97,406 + +0.1 97,424 - +0.4 97,575 + +0.1 97,575 + -0.1 97,688 + Shewana3_0083 0.27 +1.0 97,726 + Shewana3_0083 0.34 -1.6 97,726 + Shewana3_0083 0.34 -0.7 97,734 - Shewana3_0083 0.35 -0.2 97,789 + Shewana3_0083 0.45 +0.3 97,948 + Shewana3_0083 0.74 +0.5 98,072 - +0.0 98,175 + Shewana3_0084 0.25 +2.5 98,175 + Shewana3_0084 0.25 +0.1
Or see this region's nucleotide sequence