Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4377 and Shewana3_4378 are separated by 78 nucleotides Shewana3_4378 and Shewana3_4379 are separated by 8 nucleotides Shewana3_4379 and Shewana3_4380 are separated by 9 nucleotides Shewana3_4380 and Shewana3_4381 are separated by 402 nucleotides
Shewana3_4377: Shewana3_4377 - phage integrase family protein (RefSeq), at 264,486 to 265,601
_4377
Shewana3_4378: Shewana3_4378 - hypothetical protein (RefSeq), at 265,680 to 266,051
_4378
Shewana3_4379: Shewana3_4379 - hypothetical protein (RefSeq), at 266,060 to 266,965
_4379
Shewana3_4380: Shewana3_4380 - hypothetical protein (RefSeq), at 266,975 to 267,244
_4380
Shewana3_4381: Shewana3_4381 - hypothetical protein (RefSeq), at 267,647 to 267,979
_4381
Position (kb) 266
267 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 265.276 kb on + strand, within Shewana3_4377 at 265.276 kb on + strand, within Shewana3_4377 at 265.338 kb on + strand, within Shewana3_4377 at 265.346 kb on - strand, within Shewana3_4377 at 265.550 kb on + strand at 265.558 kb on - strand at 266.071 kb on - strand at 266.125 kb on + strand at 266.139 kb on - strand at 266.215 kb on + strand, within Shewana3_4379 at 266.223 kb on - strand, within Shewana3_4379 at 266.301 kb on - strand, within Shewana3_4379 at 266.435 kb on - strand, within Shewana3_4379 at 266.474 kb on - strand, within Shewana3_4379 at 266.478 kb on + strand, within Shewana3_4379 at 266.528 kb on + strand, within Shewana3_4379 at 266.533 kb on + strand, within Shewana3_4379 at 266.548 kb on - strand, within Shewana3_4379 at 266.675 kb on - strand, within Shewana3_4379 at 266.715 kb on - strand, within Shewana3_4379 at 266.811 kb on - strand, within Shewana3_4379 at 266.825 kb on - strand, within Shewana3_4379 at 266.938 kb on + strand at 267.007 kb on + strand, within Shewana3_4380 at 267.015 kb on - strand, within Shewana3_4380 at 267.015 kb on - strand, within Shewana3_4380 at 267.142 kb on + strand, within Shewana3_4380 at 267.150 kb on - strand, within Shewana3_4380 at 267.208 kb on - strand, within Shewana3_4380 at 267.218 kb on - strand at 267.274 kb on + strand at 267.362 kb on + strand at 267.367 kb on + strand at 267.370 kb on - strand at 267.370 kb on - strand at 267.384 kb on + strand at 267.437 kb on + strand at 267.490 kb on + strand at 267.492 kb on - strand at 267.899 kb on - strand, within Shewana3_4381 at 267.916 kb on + strand, within Shewana3_4381 at 267.917 kb on + strand, within Shewana3_4381 at 267.917 kb on + strand, within Shewana3_4381 at 267.917 kb on + strand, within Shewana3_4381 at 267.917 kb on + strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.935 kb on + strand, within Shewana3_4381 at 267.961 kb on - strand at 267.961 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 265,276 + Shewana3_4377 0.71 -1.5 265,276 + Shewana3_4377 0.71 +2.4 265,338 + Shewana3_4377 0.76 +1.0 265,346 - Shewana3_4377 0.77 +0.8 265,550 + -0.7 265,558 - +1.0 266,071 - -0.4 266,125 + +2.2 266,139 - +0.1 266,215 + Shewana3_4379 0.17 -0.1 266,223 - Shewana3_4379 0.18 -2.2 266,301 - Shewana3_4379 0.27 -2.3 266,435 - Shewana3_4379 0.41 -2.3 266,474 - Shewana3_4379 0.46 -2.1 266,478 + Shewana3_4379 0.46 +0.6 266,528 + Shewana3_4379 0.52 -2.5 266,533 + Shewana3_4379 0.52 +0.9 266,548 - Shewana3_4379 0.54 -1.8 266,675 - Shewana3_4379 0.68 -0.9 266,715 - Shewana3_4379 0.72 -1.6 266,811 - Shewana3_4379 0.83 -2.3 266,825 - Shewana3_4379 0.84 +3.3 266,938 + -1.6 267,007 + Shewana3_4380 0.12 +0.2 267,015 - Shewana3_4380 0.15 +0.1 267,015 - Shewana3_4380 0.15 -2.3 267,142 + Shewana3_4380 0.62 -1.1 267,150 - Shewana3_4380 0.65 -1.4 267,208 - Shewana3_4380 0.86 +0.5 267,218 - -1.8 267,274 + +2.8 267,362 + -1.6 267,367 + +0.4 267,370 - -1.1 267,370 - +0.6 267,384 + -2.3 267,437 + -0.8 267,490 + +0.6 267,492 - -1.6 267,899 - Shewana3_4381 0.76 -0.0 267,916 + Shewana3_4381 0.81 +2.5 267,917 + Shewana3_4381 0.81 +0.7 267,917 + Shewana3_4381 0.81 +1.5 267,917 + Shewana3_4381 0.81 -0.2 267,917 + Shewana3_4381 0.81 +0.2 267,925 - Shewana3_4381 0.83 +0.1 267,925 - Shewana3_4381 0.83 -2.0 267,925 - Shewana3_4381 0.83 -1.2 267,925 - Shewana3_4381 0.83 +1.7 267,925 - Shewana3_4381 0.83 +1.4 267,925 - Shewana3_4381 0.83 -2.7 267,925 - Shewana3_4381 0.83 -1.6 267,925 - Shewana3_4381 0.83 +0.9 267,935 + Shewana3_4381 0.86 -0.6 267,961 - -0.4 267,961 - +0.8
Or see this region's nucleotide sequence