Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4215 and Shewana3_4216 are separated by 68 nucleotides Shewana3_4216 and Shewana3_4217 are separated by 128 nucleotides Shewana3_4217 and Shewana3_4218 are separated by 30 nucleotides
Shewana3_4215: Shewana3_4215 - helicase domain-containing protein (RefSeq), at 85,589 to 87,583
_4215
Shewana3_4216: Shewana3_4216 - hypothetical protein (RefSeq), at 87,652 to 88,143
_4216
Shewana3_4217: Shewana3_4217 - putative signal transduction protein (RefSeq), at 88,272 to 88,994
_4217
Shewana3_4218: Shewana3_4218 - Type IV secretory pathway VirB4 components-like protein (RefSeq), at 89,025 to 91,709
_4218
Position (kb) 88
89 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 87.407 kb on + strand at 87.488 kb on + strand at 87.579 kb on + strand at 87.823 kb on + strand, within Shewana3_4216 at 87.831 kb on - strand, within Shewana3_4216 at 87.886 kb on + strand, within Shewana3_4216 at 87.956 kb on - strand, within Shewana3_4216 at 88.012 kb on - strand, within Shewana3_4216 at 88.050 kb on + strand, within Shewana3_4216 at 88.216 kb on - strand at 88.445 kb on + strand, within Shewana3_4217 at 88.585 kb on - strand, within Shewana3_4217 at 88.648 kb on + strand, within Shewana3_4217 at 88.771 kb on + strand, within Shewana3_4217 at 88.997 kb on + strand at 89.197 kb on - strand at 89.452 kb on - strand, within Shewana3_4218 at 89.656 kb on + strand, within Shewana3_4218 at 89.656 kb on + strand, within Shewana3_4218 at 89.666 kb on + strand, within Shewana3_4218 at 89.674 kb on - strand, within Shewana3_4218 at 89.818 kb on - strand, within Shewana3_4218 at 89.931 kb on - strand, within Shewana3_4218
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 87,407 + -3.4 87,488 + -1.0 87,579 + +0.7 87,823 + Shewana3_4216 0.35 -1.3 87,831 - Shewana3_4216 0.36 +0.4 87,886 + Shewana3_4216 0.48 -1.5 87,956 - Shewana3_4216 0.62 -0.1 88,012 - Shewana3_4216 0.73 +1.0 88,050 + Shewana3_4216 0.81 -2.7 88,216 - +2.0 88,445 + Shewana3_4217 0.24 -0.4 88,585 - Shewana3_4217 0.43 -0.6 88,648 + Shewana3_4217 0.52 -4.4 88,771 + Shewana3_4217 0.69 -1.0 88,997 + +0.1 89,197 - +0.4 89,452 - Shewana3_4218 0.16 -0.6 89,656 + Shewana3_4218 0.24 -1.1 89,656 + Shewana3_4218 0.24 -0.4 89,666 + Shewana3_4218 0.24 +0.0 89,674 - Shewana3_4218 0.24 -2.6 89,818 - Shewana3_4218 0.30 +0.4 89,931 - Shewana3_4218 0.34 +0.1
Or see this region's nucleotide sequence