Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_A0102 and SOA0104 are separated by 137 nucleotides SOA0104 and SOA0105 are separated by 74 nucleotides SOA0105 and SOA0106 are separated by 314 nucleotides
SO_A0103: SO_A0103 - no description, at 81,706 to 84,255
_A0103
SO_A0102: SO_A0102 - ISSod3, transposase (NCBI), at 82,900 to 84,114
_A0102
SOA0104: SOA0104 - hypothetical protein (NCBI ptt file), at 84,252 to 84,377
SOA0104
SOA0105: SOA0105 - ISSod8, transposase (NCBI ptt file), at 84,452 to 85,009
SOA0105
SOA0106: SOA0106 - methyl-accepting chemotaxis protein (NCBI ptt file), at 85,324 to 86,964
SOA0106
Position (kb) 84
85 Strain fitness (log2 ratio) -1
0
1 at 84.135 kb on - strand at 84.137 kb on - strand at 84.338 kb on - strand, within SOA0104 at 84.341 kb on - strand, within SOA0104 at 84.362 kb on + strand, within SOA0104 at 84.372 kb on + strand at 84.380 kb on - strand at 84.380 kb on - strand at 84.380 kb on - strand at 84.380 kb on - strand at 84.380 kb on - strand at 84.411 kb on - strand at 84.413 kb on + strand at 85.212 kb on + strand at 85.240 kb on - strand at 85.250 kb on + strand at 85.267 kb on + strand at 85.338 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 84,135 - +0.6 84,137 - +0.4 84,338 - SOA0104 0.68 -0.8 84,341 - SOA0104 0.71 -1.1 84,362 + SOA0104 0.87 -0.3 84,372 + -0.6 84,380 - +0.7 84,380 - -0.1 84,380 - -0.4 84,380 - +0.3 84,380 - +0.6 84,411 - +0.4 84,413 + +0.2 85,212 + -0.6 85,240 - -0.8 85,250 + -0.8 85,267 + -1.0 85,338 + +0.8
Or see this region's nucleotide sequence