Strain Fitness in Shewanella oneidensis MR-1 around SO3251

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,387,854	+				+1.3
3,387,906	-				+0.0
3,387,954	+	flgC	SO3249	0.20	-0.5
3,388,058	-	flgC	SO3249	0.45	-0.7
3,388,069	+	flgC	SO3249	0.48	+2.5
3,388,092	+	flgC	SO3249	0.53	+0.6
3,388,100	-	flgC	SO3249	0.55	+0.3
3,388,111	-	flgC	SO3249	0.58	+0.3
3,388,121	-	flgC	SO3249	0.60	-0.6
3,388,158	+	flgC	SO3249	0.69	+0.8
3,388,246	+				+0.3
3,388,503	+	flgB	SO3250	0.53	+0.2
3,388,503	+	flgB	SO3250	0.53	-0.3
3,388,503	+	flgB	SO3250	0.53	-0.4
3,388,503	+	flgB	SO3250	0.53	+0.2
3,388,521	-	flgB	SO3250	0.58	+0.6
3,388,521	-	flgB	SO3250	0.58	-0.1
3,388,642	-	flgB	SO3250	0.87	-0.1
3,388,664	-				+0.8
3,388,664	-				-0.4
3,388,936	+	cheR-2	SO3251	0.12	-1.2
3,388,936	+	cheR-2	SO3251	0.12	+0.4
3,388,936	+	cheR-2	SO3251	0.12	-0.7
3,388,937	+	cheR-2	SO3251	0.12	-0.1
3,388,944	-	cheR-2	SO3251	0.13	+2.0
3,388,945	-	cheR-2	SO3251	0.13	+0.1
3,389,047	+	cheR-2	SO3251	0.25	-0.2
3,389,055	-	cheR-2	SO3251	0.26	+1.0
3,389,055	-	cheR-2	SO3251	0.26	-0.5
3,389,254	+	cheR-2	SO3251	0.50	-2.1
3,389,262	-	cheR-2	SO3251	0.51	+0.3
3,389,486	+	cheR-2	SO3251	0.77	-0.5
3,389,499	-	cheR-2	SO3251	0.79	+0.6
3,389,552	+	cheR-2	SO3251	0.85	-0.6
3,389,560	-	cheR-2	SO3251	0.86	-0.5
3,389,562	+	cheR-2	SO3251	0.86	+0.1
3,389,607	+				-0.2
3,389,730	+				-0.3
3,389,738	-				+0.2
3,389,742	+				+0.1
3,389,742	-				+0.2
3,389,749	+				-0.3
3,389,754	+				-0.6
3,389,758	+				-0.1
3,389,759	+				-0.1
3,389,766	+				-0.0
3,389,766	+				-0.7
3,389,772	-				+0.1
3,389,774	-				-0.8
3,389,801	-				-0.7
3,389,829	-				+0.1
3,389,940	+	cheV-3	SO3252	0.18	+0.4
3,389,940	+	cheV-3	SO3252	0.18	-0.7
3,389,958	-	cheV-3	SO3252	0.20	-2.1
3,390,067	-	cheV-3	SO3252	0.31	+0.6
3,390,120	-	cheV-3	SO3252	0.37	+1.1
3,390,162	+	cheV-3	SO3252	0.42	+0.9
3,390,188	+	cheV-3	SO3252	0.45	-0.3
3,390,188	+	cheV-3	SO3252	0.45	+0.1
3,390,188	+	cheV-3	SO3252	0.45	-0.1
3,390,201	-	cheV-3	SO3252	0.46	-0.1
3,390,310	-	cheV-3	SO3252	0.58	+1.0
3,390,315	-	cheV-3	SO3252	0.58	-1.5
3,390,315	-	cheV-3	SO3252	0.58	+0.5
3,390,328	+	cheV-3	SO3252	0.60	+0.1
3,390,335	+	cheV-3	SO3252	0.60	+0.9
3,390,343	-	cheV-3	SO3252	0.61	+0.4
3,390,351	+	cheV-3	SO3252	0.62	-0.1
3,390,383	+	cheV-3	SO3252	0.66	-0.3
3,390,398	-	cheV-3	SO3252	0.67	-0.2
3,390,456	+	cheV-3	SO3252	0.74	+0.2
3,390,456	+	cheV-3	SO3252	0.74	+0.2
3,390,456	+	cheV-3	SO3252	0.74	-0.2
3,390,464	-	cheV-3	SO3252	0.74	+0.9
3,390,517	+	cheV-3	SO3252	0.80	-0.3
3,390,525	-	cheV-3	SO3252	0.81	-0.4
3,390,525	-	cheV-3	SO3252	0.81	-0.5
3,390,529	+	cheV-3	SO3252	0.82	+0.8
3,390,540	+	cheV-3	SO3252	0.83	-0.1
3,390,549	+	cheV-3	SO3252	0.84	+1.3
3,390,557	-	cheV-3	SO3252	0.85	+0.3
3,390,635	+				-0.3
3,390,643	-				-0.3
3,390,645	+				+0.0
3,390,645	+				+0.4
3,390,653	-				-0.1
3,390,653	-				+0.2