Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2685 and SO2686 are separated by 57 nucleotides SO2686 and SO2687 are separated by 3 nucleotides SO2687 and SO2688 are separated by 38 nucleotides SO2688 and SO2689 are separated by 31 nucleotides
SO2685: SO2685 - prophage MuSo2, major head subunit, putative (NCBI ptt file), at 2,807,652 to 2,808,551
SO2685
SO2686: SO2686 - hypothetical protein (NCBI ptt file), at 2,808,609 to 2,808,857
SO2686
SO2687: SO2687 - hypothetical protein (NCBI ptt file), at 2,808,861 to 2,809,421
SO2687
SO2688: SO2688 - hypothetical protein (NCBI ptt file), at 2,809,460 to 2,810,119
SO2688
SO2689: SO2689 - conserved hypothetical protein (NCBI ptt file), at 2,810,151 to 2,810,582
SO2689
Position (kb)
2808
2809
2810 Strain fitness (log2 ratio)
-1
0
1 at 2808.002 kb on - strand, within SO2685 at 2808.011 kb on + strand, within SO2685 at 2808.011 kb on + strand, within SO2685 at 2808.038 kb on - strand, within SO2685 at 2808.148 kb on - strand, within SO2685 at 2808.168 kb on - strand, within SO2685 at 2808.426 kb on + strand, within SO2685 at 2808.546 kb on + strand at 2808.546 kb on + strand at 2808.728 kb on + strand, within SO2686 at 2808.728 kb on + strand, within SO2686 at 2808.728 kb on + strand, within SO2686 at 2808.736 kb on - strand, within SO2686 at 2808.736 kb on - strand, within SO2686 at 2808.771 kb on + strand, within SO2686 at 2808.779 kb on - strand, within SO2686 at 2808.779 kb on - strand, within SO2686 at 2808.831 kb on + strand, within SO2686 at 2808.851 kb on + strand at 2808.990 kb on + strand, within SO2687 at 2809.197 kb on + strand, within SO2687 at 2809.197 kb on + strand, within SO2687 at 2809.210 kb on + strand, within SO2687 at 2809.299 kb on - strand, within SO2687 at 2809.475 kb on + strand at 2809.630 kb on + strand, within SO2688 at 2809.636 kb on + strand, within SO2688 at 2809.702 kb on + strand, within SO2688 at 2809.702 kb on + strand, within SO2688 at 2809.710 kb on - strand, within SO2688 at 2809.710 kb on - strand, within SO2688 at 2809.766 kb on - strand, within SO2688 at 2809.771 kb on - strand, within SO2688 at 2809.906 kb on - strand, within SO2688 at 2809.911 kb on - strand, within SO2688 at 2810.028 kb on - strand, within SO2688 at 2810.039 kb on + strand, within SO2688 at 2810.069 kb on - strand at 2810.105 kb on - strand at 2810.169 kb on + strand at 2810.178 kb on - strand at 2810.310 kb on + strand, within SO2689 at 2810.313 kb on - strand, within SO2689 at 2810.315 kb on + strand, within SO2689 at 2810.324 kb on - strand, within SO2689 at 2810.336 kb on - strand, within SO2689
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,808,002 - SO2685 0.39 +0.4 2,808,011 + SO2685 0.40 +0.0 2,808,011 + SO2685 0.40 +0.2 2,808,038 - SO2685 0.43 -0.3 2,808,148 - SO2685 0.55 +0.2 2,808,168 - SO2685 0.57 -0.9 2,808,426 + SO2685 0.86 +0.3 2,808,546 + -0.9 2,808,546 + +0.3 2,808,728 + SO2686 0.48 +1.2 2,808,728 + SO2686 0.48 +0.5 2,808,728 + SO2686 0.48 -0.1 2,808,736 - SO2686 0.51 +0.1 2,808,736 - SO2686 0.51 +0.7 2,808,771 + SO2686 0.65 -0.1 2,808,779 - SO2686 0.68 -0.5 2,808,779 - SO2686 0.68 +1.0 2,808,831 + SO2686 0.89 -0.8 2,808,851 + -0.0 2,808,990 + SO2687 0.23 +0.1 2,809,197 + SO2687 0.60 -0.7 2,809,197 + SO2687 0.60 +1.4 2,809,210 + SO2687 0.62 +0.2 2,809,299 - SO2687 0.78 +1.3 2,809,475 + +1.1 2,809,630 + SO2688 0.26 +0.7 2,809,636 + SO2688 0.27 +0.3 2,809,702 + SO2688 0.37 -0.0 2,809,702 + SO2688 0.37 +0.6 2,809,710 - SO2688 0.38 +0.2 2,809,710 - SO2688 0.38 +0.2 2,809,766 - SO2688 0.46 -0.1 2,809,771 - SO2688 0.47 -0.9 2,809,906 - SO2688 0.68 +0.3 2,809,911 - SO2688 0.68 +0.6 2,810,028 - SO2688 0.86 +0.0 2,810,039 + SO2688 0.88 -0.9 2,810,069 - -0.2 2,810,105 - -0.6 2,810,169 + +0.8 2,810,178 - +0.0 2,810,310 + SO2689 0.37 +0.8 2,810,313 - SO2689 0.38 -0.5 2,810,315 + SO2689 0.38 -0.4 2,810,324 - SO2689 0.40 +0.4 2,810,336 - SO2689 0.43 -0.0
Or see this region's nucleotide sequence