Strain Fitness in Shewanella oneidensis MR-1 around SO1669

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,753,958	+	phhA	SO1666	0.61	+0.1
1,753,984	+	phhA	SO1666	0.64	-0.3
1,753,992	-	phhA	SO1666	0.65	-0.2
1,753,993	-	phhA	SO1666	0.66	+0.2
1,754,105	+	phhA	SO1666	0.79	+0.2
1,754,111	+	phhA	SO1666	0.80	+0.4
1,754,113	-	phhA	SO1666	0.80	-0.8
1,754,113	-	phhA	SO1666	0.80	+0.2
1,754,201	-				+0.4
1,754,214	-				+0.2
1,754,216	-				+0.5
1,754,308	+				-0.1
1,754,317	+				+0.5
1,754,339	-				+0.4
1,754,362	-				-1.6
1,754,373	-				+0.6
1,754,388	-				-0.4
1,754,412	-		SO1667	0.16	-0.5
1,754,453	+		SO1667	0.28	+0.3
1,754,632	+		SO1667	0.81	-0.2
1,754,634	+		SO1667	0.81	+0.7
1,754,634	+		SO1667	0.81	+0.7
1,754,774	-				+0.5
1,754,779	-				-0.4
1,755,012	-				+1.4
1,755,168	+	tyrR	SO1669	0.14	-0.8
1,755,211	+	tyrR	SO1669	0.17	+0.7
1,755,297	-	tyrR	SO1669	0.22	+0.4
1,755,314	-	tyrR	SO1669	0.23	+0.1
1,755,376	+	tyrR	SO1669	0.27	-0.1
1,755,589	+	tyrR	SO1669	0.41	+1.4
1,755,669	+	tyrR	SO1669	0.46	-0.4
1,755,731	+	tyrR	SO1669	0.50	-0.1
1,755,754	-	tyrR	SO1669	0.52	+0.2
1,755,829	+	tyrR	SO1669	0.57	+0.4
1,755,835	+	tyrR	SO1669	0.57	-0.2
1,755,837	-	tyrR	SO1669	0.57	-0.0
1,755,837	-	tyrR	SO1669	0.57	+0.4
1,755,840	+	tyrR	SO1669	0.57	-0.1
1,755,894	-	tyrR	SO1669	0.61	+0.4
1,756,231	+	tyrR	SO1669	0.83	+0.3
1,756,239	-	tyrR	SO1669	0.83	+0.6
1,756,239	-	tyrR	SO1669	0.83	+0.0
1,756,307	+	tyrR	SO1669	0.88	-0.3
1,756,315	-	tyrR	SO1669	0.88	+0.3
1,756,337	-	tyrR	SO1669	0.90	+0.1
1,756,454	-				-0.1
1,756,454	-				-1.0
1,756,666	-				+0.4
1,756,701	+				+0.6
1,756,701	+				+0.3
1,756,701	+				-0.4
1,756,701	+				+0.8
1,756,701	+				-0.2
1,756,701	+				+0.1
1,756,709	-				-0.1
1,756,709	-				-0.7
1,756,709	-				+0.1
1,756,709	-				+0.7
1,756,709	-				-0.7
1,756,709	-				+0.7
1,756,709	-				-1.2
1,756,790	-				-0.3
1,756,944	+		SO1670	0.11	-0.7
1,756,966	-		SO1670	0.13	+0.4
1,756,968	+		SO1670	0.13	-0.3
1,757,026	+		SO1670	0.19	+0.2
1,757,162	-		SO1670	0.33	-0.3
1,757,312	+		SO1670	0.48	+0.1