Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3104

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3102 and DvMF_3103 overlap by 8 nucleotidesDvMF_3103 and DvMF_3104 are separated by 45 nucleotidesDvMF_3104 and rpmB are separated by 241 nucleotidesrpmB and DvMF_3106 are separated by 147 nucleotides DvMF_3102: DvMF_3102 - putative glycerol-3-phosphate acyltransferase PlsX (RefSeq), at 3,914,898 to 3,915,938 _3102 DvMF_3103: DvMF_3103 - ribosomal protein L32 (RefSeq), at 3,915,931 to 3,916,110 _3103 DvMF_3104: DvMF_3104 - protein of unknown function DUF177 (RefSeq), at 3,916,156 to 3,916,767 _3104 DvMF_3105: rpmB - 50S ribosomal protein L28 (RefSeq), at 3,917,009 to 3,917,218 rpmB DvMF_3106: DvMF_3106 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,917,366 to 3,918,346 _3106 Position (kb) 3916 3917Strain fitness (log2 ratio) -1 0 1at 3916.436 kb on + strand, within DvMF_3104at 3916.734 kb on + strandat 3916.854 kb on - strandat 3917.376 kb on - strandat 3917.407 kb on - strandat 3917.479 kb on + strand, within DvMF_3106at 3917.705 kb on - strand, within DvMF_3106

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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3,916,436 + DvMF_3104 0.46 +0.2
3,916,734 + +0.5
3,916,854 - -0.7
3,917,376 - -1.0
3,917,407 - -0.5
3,917,479 + DvMF_3106 0.12 -0.2
3,917,705 - DvMF_3106 0.35 +0.3

Or see this region's nucleotide sequence