Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3090

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3088 and DvMF_3089 are separated by 91 nucleotidesDvMF_3089 and leuS are separated by 68 nucleotidesleuS and DvMF_3091 are separated by 352 nucleotidesDvMF_3091 and ribH are separated by 4 nucleotides DvMF_3088: DvMF_3088 - hypothetical protein (RefSeq), at 3,899,415 to 3,900,566 _3088 DvMF_3089: DvMF_3089 - putative lipoprotein (RefSeq), at 3,900,658 to 3,901,176 _3089 DvMF_3090: leuS - leucyl-tRNA synthetase (RefSeq), at 3,901,245 to 3,903,749 leuS DvMF_3091: DvMF_3091 - NusB antitermination factor (RefSeq), at 3,904,102 to 3,904,599 _3091 DvMF_3092: ribH - 6,7-dimethyl-8-ribityllumazine synthase (RefSeq), at 3,904,604 to 3,905,074 ribH Position (kb) 3901 3902 3903 3904Strain fitness (log2 ratio) -1 0 1at 3900.603 kb on + strandat 3900.664 kb on - strandat 3903.808 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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3,900,603 + -0.5
3,900,664 - +0.2
3,903,808 + -0.8

Or see this region's nucleotide sequence