Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2913

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2912 and DvMF_2913 are separated by 300 nucleotidesDvMF_2913 and DvMF_2914 overlap by 4 nucleotides DvMF_2912: DvMF_2912 - flagellar hook-associated 2 domain protein (RefSeq), at 3,680,696 to 3,682,429 _2912 DvMF_2913: DvMF_2913 - peptidase M22 glycoprotease (RefSeq), at 3,682,730 to 3,683,878 _2913 DvMF_2914: DvMF_2914 - membrane-associated zinc metalloprotease (RefSeq), at 3,683,875 to 3,684,939 _2914 Position (kb) 3682 3683 3684Strain fitness (log2 ratio) -1 0 1at 3681.783 kb on + strand, within DvMF_2912at 3681.882 kb on - strand, within DvMF_2912at 3681.896 kb on + strand, within DvMF_2912at 3682.006 kb on - strand, within DvMF_2912at 3682.103 kb on + strand, within DvMF_2912at 3682.156 kb on - strand, within DvMF_2912at 3683.902 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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3,681,783 + DvMF_2912 0.63 -1.0
3,681,882 - DvMF_2912 0.68 -0.6
3,681,896 + DvMF_2912 0.69 -0.8
3,682,006 - DvMF_2912 0.76 -0.9
3,682,103 + DvMF_2912 0.81 -1.4
3,682,156 - DvMF_2912 0.84 -0.7
3,683,902 - -0.2

Or see this region's nucleotide sequence