Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2654

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2652 and DvMF_2653 are separated by 61 nucleotidesDvMF_2653 and DvMF_2654 are separated by 171 nucleotidesDvMF_2654 and DvMF_2655 are separated by 213 nucleotides DvMF_2652: DvMF_2652 - transcriptional regulator, MerR family (RefSeq), at 3,353,408 to 3,353,779 _2652 DvMF_2653: DvMF_2653 - Carboxymuconolactone decarboxylase (RefSeq), at 3,353,841 to 3,354,257 _2653 DvMF_2654: DvMF_2654 - acetyltransferase (RefSeq), at 3,354,429 to 3,354,938 _2654 DvMF_2655: DvMF_2655 - hypothetical protein (RefSeq), at 3,355,152 to 3,355,688 _2655 Position (kb) 3354 3355Strain fitness (log2 ratio) -1 0 1at 3353.433 kb on + strandat 3353.433 kb on + strandat 3353.448 kb on + strand, within DvMF_2652at 3353.792 kb on + strandat 3353.833 kb on + strandat 3354.183 kb on - strand, within DvMF_2653at 3354.384 kb on - strandat 3355.080 kb on + strandat 3355.296 kb on - strand, within DvMF_2655at 3355.396 kb on + strand, within DvMF_2655at 3355.445 kb on + strand, within DvMF_2655at 3355.453 kb on - strand, within DvMF_2655at 3355.463 kb on - strand, within DvMF_2655at 3355.464 kb on - strand, within DvMF_2655at 3355.484 kb on + strand, within DvMF_2655at 3355.692 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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3,353,433 + -1.1
3,353,433 + -0.3
3,353,448 + DvMF_2652 0.11 +0.3
3,353,792 + -0.4
3,353,833 + -0.5
3,354,183 - DvMF_2653 0.82 -0.5
3,354,384 - +0.0
3,355,080 + -0.0
3,355,296 - DvMF_2655 0.27 -0.3
3,355,396 + DvMF_2655 0.45 -0.4
3,355,445 + DvMF_2655 0.55 -0.7
3,355,453 - DvMF_2655 0.56 -0.0
3,355,463 - DvMF_2655 0.58 -0.7
3,355,464 - DvMF_2655 0.58 -0.0
3,355,484 + DvMF_2655 0.62 -0.4
3,355,692 + -0.2

Or see this region's nucleotide sequence