Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_R0056

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2218 and DvMF_R0056 are separated by 572 nucleotidesDvMF_R0056 and DvMF_R0057 are separated by 112 nucleotidesDvMF_R0057 and DvMF_R0058 are separated by 33 nucleotidesDvMF_R0058 and DvMF_R0059 are separated by 168 nucleotides DvMF_2218: DvMF_2218 - Lytic transglycosylase catalytic (RefSeq), at 2,770,936 to 2,772,792 _2218 DvMF_R0056: DvMF_R0056 - 16S ribosomal RNA (RefSeq), at 2,773,365 to 2,774,900 _R0056 DvMF_R0057: DvMF_R0057 - tRNA-Ile (RefSeq), at 2,775,013 to 2,775,089 _R0057 DvMF_R0058: DvMF_R0058 - tRNA-Ala (RefSeq), at 2,775,123 to 2,775,198 _R0058 DvMF_R0059: DvMF_R0059 - 23S ribosomal RNA (RefSeq), at 2,775,367 to 2,778,292 _R0059 Position (kb) 2773 2774 2775Strain fitness (log2 ratio) -1 0 1at 2772.400 kb on - strand, within DvMF_2218at 2772.641 kb on - strandat 2772.692 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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2,772,400 - DvMF_2218 0.79 -0.0
2,772,641 - -0.3
2,772,692 + -0.0

Or see this region's nucleotide sequence