Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2174 and DvMF_2175 are separated by 299 nucleotides DvMF_2175 and DvMF_2176 are separated by 107 nucleotides DvMF_2176 and DvMF_2177 are separated by 372 nucleotides
DvMF_2174: DvMF_2174 - AzlC family protein (RefSeq), at 2,711,285 to 2,712,133
_2174
DvMF_2175: DvMF_2175 - transcriptional regulator, GntR family with aminotransferase domain (RefSeq), at 2,712,433 to 2,713,929
_2175
DvMF_2176: DvMF_2176 - hypothetical protein (RefSeq), at 2,714,037 to 2,714,462
_2176
DvMF_2177: DvMF_2177 - Hydantoinase/oxoprolinase (RefSeq), at 2,714,835 to 2,716,832
_2177
Position (kb)
2712
2713
2714 Strain fitness (log2 ratio)
-1
0
1 at 2711.470 kb on + strand, within DvMF_2174 at 2711.621 kb on - strand, within DvMF_2174 at 2711.806 kb on + strand, within DvMF_2174 at 2711.960 kb on + strand, within DvMF_2174 at 2712.061 kb on - strand at 2712.293 kb on - strand at 2712.341 kb on - strand at 2712.375 kb on + strand at 2712.602 kb on - strand, within DvMF_2175 at 2712.610 kb on - strand, within DvMF_2175 at 2712.724 kb on + strand, within DvMF_2175 at 2712.775 kb on + strand, within DvMF_2175 at 2712.825 kb on - strand, within DvMF_2175 at 2712.995 kb on + strand, within DvMF_2175 at 2713.028 kb on + strand, within DvMF_2175 at 2713.059 kb on - strand, within DvMF_2175 at 2713.059 kb on - strand, within DvMF_2175 at 2713.095 kb on + strand, within DvMF_2175 at 2713.186 kb on - strand, within DvMF_2175 at 2713.442 kb on - strand, within DvMF_2175 at 2713.473 kb on - strand, within DvMF_2175 at 2713.506 kb on + strand, within DvMF_2175 at 2713.744 kb on - strand, within DvMF_2175 at 2714.464 kb on + strand at 2714.464 kb on + strand at 2714.465 kb on - strand at 2714.734 kb on + strand at 2714.897 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 2,711,470 + DvMF_2174 0.22 +0.3 2,711,621 - DvMF_2174 0.40 -0.4 2,711,806 + DvMF_2174 0.61 -0.3 2,711,960 + DvMF_2174 0.80 -0.5 2,712,061 - -0.4 2,712,293 - -0.2 2,712,341 - +0.2 2,712,375 + -0.4 2,712,602 - DvMF_2175 0.11 -0.2 2,712,610 - DvMF_2175 0.12 +0.1 2,712,724 + DvMF_2175 0.19 -0.4 2,712,775 + DvMF_2175 0.23 +0.5 2,712,825 - DvMF_2175 0.26 -0.4 2,712,995 + DvMF_2175 0.38 -1.1 2,713,028 + DvMF_2175 0.40 -0.7 2,713,059 - DvMF_2175 0.42 -0.3 2,713,059 - DvMF_2175 0.42 -0.2 2,713,095 + DvMF_2175 0.44 -0.0 2,713,186 - DvMF_2175 0.50 -0.3 2,713,442 - DvMF_2175 0.67 -0.1 2,713,473 - DvMF_2175 0.69 -0.1 2,713,506 + DvMF_2175 0.72 -0.0 2,713,744 - DvMF_2175 0.88 -0.3 2,714,464 + -1.0 2,714,464 + -0.6 2,714,465 - -0.4 2,714,734 + -0.5 2,714,897 + -0.4
Or see this region's nucleotide sequence