Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_R0054

Experiment: rich MoYLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2128 and DvMF_R0054 are separated by 472 nucleotidesDvMF_R0054 and DvMF_2129 are separated by 912 nucleotides DvMF_2128: DvMF_2128 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (RefSeq), at 2,647,644 to 2,648,234 _2128 DvMF_R0054: DvMF_R0054 - tRNA-Arg (RefSeq), at 2,648,707 to 2,648,783 _R0054 DvMF_2129: DvMF_2129 - L-lactate transport (RefSeq), at 2,649,696 to 2,651,351 _2129 Position (kb) 2648 2649Strain fitness (log2 ratio) -1 0 1at 2648.268 kb on - strandat 2648.606 kb on + strandat 2648.653 kb on + strandat 2649.149 kb on + strandat 2649.391 kb on - strandat 2649.658 kb on + strandat 2649.703 kb on + strandat 2649.749 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
remove
2,648,268 - -0.2
2,648,606 + -0.3
2,648,653 + -0.6
2,649,149 + -0.1
2,649,391 - -0.2
2,649,658 + -1.4
2,649,703 + -0.3
2,649,749 + -0.3

Or see this region's nucleotide sequence