Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2003

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2002 and DvMF_2003 are separated by 366 nucleotidesDvMF_2003 and DvMF_2004 are separated by 4 nucleotides DvMF_2002: DvMF_2002 - hypothetical protein (RefSeq), at 2,481,968 to 2,482,930 _2002 DvMF_2003: DvMF_2003 - Altronate dehydratase (RefSeq), at 2,483,297 to 2,484,460 _2003 DvMF_2004: DvMF_2004 - D-galactarate dehydratase/altronate hydrolase-like protein (RefSeq), at 2,484,465 to 2,484,749 _2004 Position (kb) 2483 2484 2485Strain fitness (log2 ratio) -1 0 1at 2482.371 kb on + strand, within DvMF_2002at 2482.382 kb on - strand, within DvMF_2002at 2482.440 kb on + strand, within DvMF_2002at 2482.462 kb on - strand, within DvMF_2002at 2482.472 kb on - strand, within DvMF_2002at 2482.584 kb on - strand, within DvMF_2002at 2482.666 kb on - strand, within DvMF_2002at 2482.815 kb on + strand, within DvMF_2002at 2482.870 kb on + strandat 2482.956 kb on + strandat 2482.964 kb on - strandat 2482.966 kb on + strandat 2483.172 kb on - strandat 2483.194 kb on - strandat 2483.271 kb on - strandat 2484.930 kb on + strandat 2485.235 kb on + strandat 2485.279 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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2,482,371 + DvMF_2002 0.42 -0.1
2,482,382 - DvMF_2002 0.43 -0.2
2,482,440 + DvMF_2002 0.49 -0.2
2,482,462 - DvMF_2002 0.51 +0.4
2,482,472 - DvMF_2002 0.52 -0.2
2,482,584 - DvMF_2002 0.64 +0.2
2,482,666 - DvMF_2002 0.72 +0.1
2,482,815 + DvMF_2002 0.88 -0.0
2,482,870 + -0.2
2,482,956 + +0.0
2,482,964 - +0.2
2,482,966 + +0.2
2,483,172 - -0.5
2,483,194 - -0.3
2,483,271 - -0.1
2,484,930 + -0.0
2,485,235 + -0.7
2,485,279 - -0.2

Or see this region's nucleotide sequence