Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1669

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1666 and DvMF_1667 are separated by 317 nucleotidesDvMF_1667 and DvMF_1668 are separated by 121 nucleotidesDvMF_1668 and DvMF_1669 are separated by 10 nucleotidesDvMF_1669 and DvMF_1670 are separated by 8 nucleotidesDvMF_1670 and DvMF_1671 are separated by 170 nucleotides DvMF_1666: DvMF_1666 - acyltransferase 3 (RefSeq), at 2,039,862 to 2,040,881 _1666 DvMF_1667: DvMF_1667 - hypothetical protein (RefSeq), at 2,041,199 to 2,041,420 _1667 DvMF_1668: DvMF_1668 - plasmid maintenance system killer (RefSeq), at 2,041,542 to 2,041,820 _1668 DvMF_1669: DvMF_1669 - plasmid maintenance system antidote protein, XRE family (RefSeq), at 2,041,831 to 2,042,136 _1669 DvMF_1670: DvMF_1670 - hypothetical protein (RefSeq), at 2,042,145 to 2,042,438 _1670 DvMF_1671: DvMF_1671 - hypothetical protein (RefSeq), at 2,042,609 to 2,043,241 _1671 Position (kb) 2041 2042 2043Strain fitness (log2 ratio) -1 0 1at 2041.187 kb on + strandat 2041.193 kb on - strandat 2041.277 kb on - strand, within DvMF_1667at 2041.397 kb on - strand, within DvMF_1667at 2041.580 kb on + strand, within DvMF_1668at 2041.706 kb on + strand, within DvMF_1668at 2042.116 kb on - strandat 2042.117 kb on + strandat 2042.233 kb on + strand, within DvMF_1670at 2042.309 kb on - strand, within DvMF_1670at 2042.525 kb on - strandat 2042.833 kb on + strand, within DvMF_1671at 2043.129 kb on - strand, within DvMF_1671

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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2,041,187 + -0.2
2,041,193 - -0.1
2,041,277 - DvMF_1667 0.35 -0.5
2,041,397 - DvMF_1667 0.89 -0.4
2,041,580 + DvMF_1668 0.14 -0.3
2,041,706 + DvMF_1668 0.59 -0.1
2,042,116 - -1.6
2,042,117 + -0.2
2,042,233 + DvMF_1670 0.30 -0.7
2,042,309 - DvMF_1670 0.56 +0.0
2,042,525 - +0.2
2,042,833 + DvMF_1671 0.35 -0.3
2,043,129 - DvMF_1671 0.82 -0.1

Or see this region's nucleotide sequence