Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1601

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1598 and DvMF_1599 are separated by 1 nucleotidesDvMF_1599 and DvMF_1600 overlap by 4 nucleotidesDvMF_1600 and DvMF_1601 overlap by 1 nucleotidesDvMF_1601 and DvMF_1602 are separated by 10 nucleotidesDvMF_1602 and DvMF_1603 overlap by 14 nucleotides DvMF_1598: DvMF_1598 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,969,948 to 1,970,571 _1598 DvMF_1599: DvMF_1599 - NADH-ubiquinone/plastoquinone oxidoreductase chain 6 (RefSeq), at 1,970,573 to 1,971,079 _1599 DvMF_1600: DvMF_1600 - NADH-ubiquinone oxidoreductase chain 4L (RefSeq), at 1,971,076 to 1,971,390 _1600 DvMF_1601: DvMF_1601 - putative monovalent cation/H+ antiporter subunit D (RefSeq), at 1,971,390 to 1,972,889 _1601 DvMF_1602: DvMF_1602 - hypothetical protein (RefSeq), at 1,972,900 to 1,973,157 _1602 DvMF_1603: DvMF_1603 - putative monovalent cation/H+ antiporter subunit D (RefSeq), at 1,973,144 to 1,974,928 _1603 Position (kb) 1971 1972 1973Strain fitness (log2 ratio) -1 0 1at 1970.541 kb on - strandat 1970.588 kb on + strandat 1970.892 kb on - strand, within DvMF_1599at 1971.037 kb on + strandat 1971.042 kb on + strandat 1971.344 kb on + strand, within DvMF_1600at 1971.548 kb on - strand, within DvMF_1601at 1971.742 kb on + strand, within DvMF_1601at 1971.818 kb on - strand, within DvMF_1601at 1971.959 kb on - strand, within DvMF_1601at 1972.038 kb on + strand, within DvMF_1601at 1972.046 kb on - strand, within DvMF_1601at 1972.065 kb on + strand, within DvMF_1601at 1972.230 kb on + strand, within DvMF_1601at 1972.254 kb on - strand, within DvMF_1601at 1972.316 kb on + strand, within DvMF_1601at 1972.323 kb on + strand, within DvMF_1601at 1972.392 kb on - strand, within DvMF_1601at 1972.418 kb on - strand, within DvMF_1601at 1972.525 kb on + strand, within DvMF_1601at 1972.549 kb on + strand, within DvMF_1601at 1972.640 kb on + strand, within DvMF_1601at 1972.761 kb on + strandat 1972.968 kb on - strand, within DvMF_1602at 1972.973 kb on - strand, within DvMF_1602at 1973.042 kb on + strand, within DvMF_1602at 1973.135 kb on - strandat 1973.140 kb on - strandat 1973.297 kb on - strandat 1973.308 kb on - strandat 1973.308 kb on - strandat 1973.323 kb on - strand, within DvMF_1603at 1973.521 kb on - strand, within DvMF_1603at 1973.554 kb on - strand, within DvMF_1603at 1973.659 kb on - strand, within DvMF_1603

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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1,970,541 - -0.2
1,970,588 + -0.5
1,970,892 - DvMF_1599 0.63 +0.5
1,971,037 + -0.1
1,971,042 + -0.0
1,971,344 + DvMF_1600 0.85 +1.5
1,971,548 - DvMF_1601 0.11 -0.2
1,971,742 + DvMF_1601 0.23 -0.1
1,971,818 - DvMF_1601 0.29 -0.4
1,971,959 - DvMF_1601 0.38 -0.9
1,972,038 + DvMF_1601 0.43 -0.1
1,972,046 - DvMF_1601 0.44 -0.0
1,972,065 + DvMF_1601 0.45 -0.5
1,972,230 + DvMF_1601 0.56 -0.4
1,972,254 - DvMF_1601 0.58 -0.5
1,972,316 + DvMF_1601 0.62 -0.3
1,972,323 + DvMF_1601 0.62 -0.5
1,972,392 - DvMF_1601 0.67 +0.3
1,972,418 - DvMF_1601 0.69 -0.4
1,972,525 + DvMF_1601 0.76 -1.0
1,972,549 + DvMF_1601 0.77 -0.1
1,972,640 + DvMF_1601 0.83 -0.6
1,972,761 + -0.4
1,972,968 - DvMF_1602 0.26 -0.6
1,972,973 - DvMF_1602 0.28 +0.0
1,973,042 + DvMF_1602 0.55 +0.2
1,973,135 - -0.2
1,973,140 - +0.7
1,973,297 - -0.4
1,973,308 - -0.0
1,973,308 - +0.0
1,973,323 - DvMF_1603 0.10 -0.3
1,973,521 - DvMF_1603 0.21 -0.3
1,973,554 - DvMF_1603 0.23 -0.3
1,973,659 - DvMF_1603 0.29 -0.0

Or see this region's nucleotide sequence