Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1361

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1360 and DvMF_1361 overlap by 1 nucleotidesDvMF_1361 and DvMF_1362 are separated by 182 nucleotidesDvMF_1362 and DvMF_1363 are separated by 59 nucleotides DvMF_1360: DvMF_1360 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,663,959 to 1,665,536 _1360 DvMF_1361: DvMF_1361 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 1,665,536 to 1,668,274 _1361 DvMF_1362: DvMF_1362 - hypothetical protein (RefSeq), at 1,668,457 to 1,668,852 _1362 DvMF_1363: DvMF_1363 - hypothetical protein (RefSeq), at 1,668,912 to 1,670,654 _1363 Position (kb) 1665 1666 1667 1668 1669Strain fitness (log2 ratio) -1 0 1 2at 1665.072 kb on - strand, within DvMF_1360at 1665.176 kb on - strand, within DvMF_1360at 1665.183 kb on - strand, within DvMF_1360at 1665.183 kb on - strand, within DvMF_1360at 1665.320 kb on + strand, within DvMF_1360at 1665.328 kb on - strand, within DvMF_1360at 1665.413 kb on - strandat 1665.413 kb on - strandat 1665.413 kb on - strandat 1665.524 kb on + strandat 1665.797 kb on + strandat 1666.164 kb on + strand, within DvMF_1361at 1666.250 kb on + strand, within DvMF_1361at 1666.292 kb on + strand, within DvMF_1361at 1666.675 kb on + strand, within DvMF_1361at 1666.956 kb on + strand, within DvMF_1361at 1666.956 kb on + strand, within DvMF_1361at 1666.962 kb on + strand, within DvMF_1361at 1667.030 kb on + strand, within DvMF_1361at 1667.347 kb on + strand, within DvMF_1361at 1667.355 kb on - strand, within DvMF_1361at 1667.846 kb on + strand, within DvMF_1361at 1667.889 kb on + strand, within DvMF_1361at 1667.993 kb on - strand, within DvMF_1361at 1668.179 kb on - strandat 1668.182 kb on - strandat 1668.184 kb on - strandat 1668.378 kb on - strandat 1668.603 kb on + strand, within DvMF_1362at 1668.671 kb on + strand, within DvMF_1362at 1668.679 kb on - strand, within DvMF_1362at 1668.698 kb on + strand, within DvMF_1362at 1668.732 kb on - strand, within DvMF_1362at 1668.974 kb on - strandat 1668.990 kb on + strandat 1669.150 kb on + strand, within DvMF_1363at 1669.264 kb on + strand, within DvMF_1363

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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1,665,072 - DvMF_1360 0.71 -0.3
1,665,176 - DvMF_1360 0.77 -0.3
1,665,183 - DvMF_1360 0.78 -0.3
1,665,183 - DvMF_1360 0.78 +0.3
1,665,320 + DvMF_1360 0.86 -0.8
1,665,328 - DvMF_1360 0.87 -0.6
1,665,413 - -0.3
1,665,413 - -0.5
1,665,413 - -0.2
1,665,524 + -0.2
1,665,797 + -0.3
1,666,164 + DvMF_1361 0.23 -0.1
1,666,250 + DvMF_1361 0.26 -1.7
1,666,292 + DvMF_1361 0.28 -1.0
1,666,675 + DvMF_1361 0.42 +2.2
1,666,956 + DvMF_1361 0.52 -1.1
1,666,956 + DvMF_1361 0.52 -0.2
1,666,962 + DvMF_1361 0.52 -0.7
1,667,030 + DvMF_1361 0.55 -0.2
1,667,347 + DvMF_1361 0.66 -0.1
1,667,355 - DvMF_1361 0.66 -0.3
1,667,846 + DvMF_1361 0.84 -0.3
1,667,889 + DvMF_1361 0.86 -0.3
1,667,993 - DvMF_1361 0.90 -0.5
1,668,179 - -0.3
1,668,182 - -0.3
1,668,184 - +0.0
1,668,378 - -0.3
1,668,603 + DvMF_1362 0.37 -0.2
1,668,671 + DvMF_1362 0.54 +0.2
1,668,679 - DvMF_1362 0.56 -0.6
1,668,698 + DvMF_1362 0.61 -0.9
1,668,732 - DvMF_1362 0.69 +0.0
1,668,974 - -0.3
1,668,990 + -0.0
1,669,150 + DvMF_1363 0.14 -0.1
1,669,264 + DvMF_1363 0.20 -0.0

Or see this region's nucleotide sequence