Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1304

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1303 and DvMF_1304 are separated by 0 nucleotidesDvMF_1304 and DvMF_1305 overlap by 4 nucleotides DvMF_1303: DvMF_1303 - baseplate assembly protein, putative (RefSeq), at 1,592,415 to 1,593,587 _1303 DvMF_1304: DvMF_1304 - hypothetical protein (RefSeq), at 1,593,588 to 1,594,259 _1304 DvMF_1305: DvMF_1305 - tail fiber protein, putative (RefSeq), at 1,594,256 to 1,595,773 _1305 Position (kb) 1593 1594 1595Strain fitness (log2 ratio) -1 0 1at 1592.727 kb on - strand, within DvMF_1303at 1593.090 kb on + strand, within DvMF_1303at 1593.132 kb on - strand, within DvMF_1303at 1593.147 kb on - strand, within DvMF_1303at 1593.346 kb on + strand, within DvMF_1303at 1593.383 kb on + strand, within DvMF_1303at 1593.383 kb on + strand, within DvMF_1303at 1593.391 kb on - strand, within DvMF_1303at 1593.391 kb on - strand, within DvMF_1303at 1593.391 kb on - strand, within DvMF_1303at 1593.391 kb on - strand, within DvMF_1303at 1593.526 kb on + strandat 1593.548 kb on - strandat 1593.892 kb on + strand, within DvMF_1304at 1593.954 kb on - strand, within DvMF_1304at 1594.239 kb on - strandat 1594.466 kb on + strand, within DvMF_1305at 1594.568 kb on - strand, within DvMF_1305at 1594.667 kb on - strand, within DvMF_1305at 1594.672 kb on - strand, within DvMF_1305at 1594.672 kb on - strand, within DvMF_1305at 1594.700 kb on - strand, within DvMF_1305at 1594.745 kb on - strand, within DvMF_1305at 1594.776 kb on + strand, within DvMF_1305at 1594.901 kb on + strand, within DvMF_1305at 1594.907 kb on + strand, within DvMF_1305at 1594.956 kb on - strand, within DvMF_1305at 1594.989 kb on - strand, within DvMF_1305

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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1,592,727 - DvMF_1303 0.27 +0.1
1,593,090 + DvMF_1303 0.58 -0.1
1,593,132 - DvMF_1303 0.61 +0.6
1,593,147 - DvMF_1303 0.62 +0.2
1,593,346 + DvMF_1303 0.79 +0.1
1,593,383 + DvMF_1303 0.83 +0.2
1,593,383 + DvMF_1303 0.83 +0.2
1,593,391 - DvMF_1303 0.83 +0.1
1,593,391 - DvMF_1303 0.83 -0.0
1,593,391 - DvMF_1303 0.83 +0.7
1,593,391 - DvMF_1303 0.83 -0.3
1,593,526 + +0.2
1,593,548 - +0.8
1,593,892 + DvMF_1304 0.45 -0.0
1,593,954 - DvMF_1304 0.54 +0.1
1,594,239 - +0.1
1,594,466 + DvMF_1305 0.14 +0.1
1,594,568 - DvMF_1305 0.21 -0.5
1,594,667 - DvMF_1305 0.27 -0.4
1,594,672 - DvMF_1305 0.27 -0.5
1,594,672 - DvMF_1305 0.27 +0.0
1,594,700 - DvMF_1305 0.29 +0.2
1,594,745 - DvMF_1305 0.32 +0.2
1,594,776 + DvMF_1305 0.34 +0.3
1,594,901 + DvMF_1305 0.42 -0.0
1,594,907 + DvMF_1305 0.43 -0.1
1,594,956 - DvMF_1305 0.46 +1.0
1,594,989 - DvMF_1305 0.48 -0.1

Or see this region's nucleotide sequence