Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1295 and DvMF_1296 are separated by 178 nucleotides DvMF_1296 and DvMF_1297 are separated by 47 nucleotides DvMF_1297 and DvMF_1298 are separated by 57 nucleotides DvMF_1298 and DvMF_1299 overlap by 4 nucleotides DvMF_1299 and DvMF_1300 overlap by 1 nucleotides
DvMF_1295: DvMF_1295 - hypothetical protein (RefSeq), at 1,585,244 to 1,586,284
_1295
DvMF_1296: DvMF_1296 - hypothetical protein (RefSeq), at 1,586,463 to 1,586,819
_1296
DvMF_1297: DvMF_1297 - hypothetical protein (RefSeq), at 1,586,867 to 1,587,004
_1297
DvMF_1298: DvMF_1298 - phage tail tape measure protein, TP901 family (RefSeq), at 1,587,062 to 1,589,407
_1298
DvMF_1299: DvMF_1299 - hypothetical protein (RefSeq), at 1,589,404 to 1,589,949
_1299
DvMF_1300: DvMF_1300 - hypothetical protein (RefSeq), at 1,589,949 to 1,590,749
_1300
Position (kb) 1587
1588
1589
1590 Strain fitness (log2 ratio) -1
0
1 at 1586.474 kb on + strand at 1586.482 kb on - strand at 1586.561 kb on + strand, within DvMF_1296 at 1586.569 kb on - strand, within DvMF_1296 at 1586.569 kb on - strand, within DvMF_1296 at 1586.600 kb on + strand, within DvMF_1296 at 1586.668 kb on + strand, within DvMF_1296 at 1586.726 kb on + strand, within DvMF_1296 at 1586.783 kb on + strand, within DvMF_1296 at 1586.783 kb on + strand, within DvMF_1296 at 1586.791 kb on - strand at 1586.857 kb on + strand at 1586.968 kb on - strand, within DvMF_1297 at 1587.146 kb on - strand at 1587.242 kb on + strand at 1587.255 kb on - strand at 1587.433 kb on + strand, within DvMF_1298 at 1587.441 kb on - strand, within DvMF_1298 at 1587.775 kb on + strand, within DvMF_1298 at 1587.775 kb on + strand, within DvMF_1298 at 1587.775 kb on + strand, within DvMF_1298 at 1587.775 kb on + strand, within DvMF_1298 at 1587.783 kb on - strand, within DvMF_1298 at 1587.783 kb on - strand, within DvMF_1298 at 1587.783 kb on - strand, within DvMF_1298 at 1587.793 kb on + strand, within DvMF_1298 at 1587.970 kb on - strand, within DvMF_1298 at 1587.980 kb on - strand, within DvMF_1298 at 1588.215 kb on + strand, within DvMF_1298 at 1588.228 kb on - strand, within DvMF_1298 at 1588.339 kb on + strand, within DvMF_1298 at 1588.381 kb on + strand, within DvMF_1298 at 1588.392 kb on + strand, within DvMF_1298 at 1588.431 kb on - strand, within DvMF_1298 at 1588.581 kb on - strand, within DvMF_1298 at 1588.777 kb on - strand, within DvMF_1298 at 1588.916 kb on + strand, within DvMF_1298 at 1589.009 kb on - strand, within DvMF_1298 at 1589.131 kb on - strand, within DvMF_1298 at 1589.190 kb on - strand at 1589.226 kb on - strand at 1589.316 kb on + strand at 1589.417 kb on + strand at 1589.579 kb on + strand, within DvMF_1299 at 1589.587 kb on - strand, within DvMF_1299 at 1589.622 kb on + strand, within DvMF_1299 at 1589.854 kb on + strand, within DvMF_1299 at 1589.879 kb on - strand, within DvMF_1299 at 1590.058 kb on + strand, within DvMF_1300 at 1590.254 kb on + strand, within DvMF_1300
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 1,586,474 + -0.4 1,586,482 - +0.6 1,586,561 + DvMF_1296 0.27 -0.0 1,586,569 - DvMF_1296 0.30 +0.1 1,586,569 - DvMF_1296 0.30 -0.7 1,586,600 + DvMF_1296 0.38 +0.6 1,586,668 + DvMF_1296 0.57 +1.1 1,586,726 + DvMF_1296 0.74 -0.1 1,586,783 + DvMF_1296 0.90 +0.3 1,586,783 + DvMF_1296 0.90 +0.1 1,586,791 - -0.5 1,586,857 + +0.4 1,586,968 - DvMF_1297 0.73 -0.1 1,587,146 - -0.4 1,587,242 + -0.3 1,587,255 - -0.0 1,587,433 + DvMF_1298 0.16 -0.0 1,587,441 - DvMF_1298 0.16 -0.1 1,587,775 + DvMF_1298 0.30 +0.1 1,587,775 + DvMF_1298 0.30 +0.3 1,587,775 + DvMF_1298 0.30 +0.0 1,587,775 + DvMF_1298 0.30 -0.1 1,587,783 - DvMF_1298 0.31 -0.1 1,587,783 - DvMF_1298 0.31 +0.2 1,587,783 - DvMF_1298 0.31 +0.3 1,587,793 + DvMF_1298 0.31 +0.2 1,587,970 - DvMF_1298 0.39 -0.6 1,587,980 - DvMF_1298 0.39 -0.4 1,588,215 + DvMF_1298 0.49 -0.2 1,588,228 - DvMF_1298 0.50 +0.0 1,588,339 + DvMF_1298 0.54 -0.1 1,588,381 + DvMF_1298 0.56 -0.1 1,588,392 + DvMF_1298 0.57 -0.3 1,588,431 - DvMF_1298 0.58 +0.1 1,588,581 - DvMF_1298 0.65 -0.5 1,588,777 - DvMF_1298 0.73 -0.1 1,588,916 + DvMF_1298 0.79 -0.2 1,589,009 - DvMF_1298 0.83 -0.2 1,589,131 - DvMF_1298 0.88 +0.4 1,589,190 - -0.1 1,589,226 - +0.0 1,589,316 + -0.6 1,589,417 + +0.0 1,589,579 + DvMF_1299 0.32 +0.1 1,589,587 - DvMF_1299 0.34 -0.1 1,589,622 + DvMF_1299 0.40 -0.2 1,589,854 + DvMF_1299 0.82 +0.1 1,589,879 - DvMF_1299 0.87 -0.1 1,590,058 + DvMF_1300 0.14 -0.1 1,590,254 + DvMF_1300 0.38 -0.3
Or see this region's nucleotide sequence