Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_R0027

Experiment: rich MoYLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_R0024 and DvMF_R0025 are separated by 168 nucleotidesDvMF_R0025 and DvMF_R0026 are separated by 33 nucleotidesDvMF_R0026 and DvMF_R0027 are separated by 112 nucleotidesDvMF_R0027 and DvMF_0918 are separated by 973 nucleotides DvMF_R0024: DvMF_R0024 - 23S ribosomal RNA (RefSeq), at 1,104,788 to 1,107,713 _R0024 DvMF_R0025: DvMF_R0025 - tRNA-Ala (RefSeq), at 1,107,882 to 1,107,957 _R0025 DvMF_R0026: DvMF_R0026 - tRNA-Ile (RefSeq), at 1,107,991 to 1,108,067 _R0026 DvMF_R0027: DvMF_R0027 - 16S ribosomal RNA (RefSeq), at 1,108,180 to 1,109,715 _R0027 DvMF_0918: DvMF_0918 - hypothetical protein (RefSeq), at 1,110,689 to 1,111,306 _0918 Position (kb) 1108 1109 1110Strain fitness (log2 ratio) -1 0 1at 1109.840 kb on + strandat 1109.986 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
remove
1,109,840 + +0.4
1,109,986 + -0.0

Or see this region's nucleotide sequence