Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0369 and DvMF_0370 are separated by 303 nucleotides DvMF_0370 and DvMF_0371 are separated by 334 nucleotides
DvMF_0369: DvMF_0369 - pseudouridine synthase (RefSeq), at 434,506 to 435,261
_0369
DvMF_0370: DvMF_0370 - outer membrane lipoprotein carrier protein LolA (RefSeq), at 435,565 to 436,266
_0370
DvMF_0371: DvMF_0371 - cell divisionFtsK/SpoIIIE (RefSeq), at 436,601 to 439,333
_0371
Position (kb) 435
436
437 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 434.589 kb on + strand, within DvMF_0369 at 434.590 kb on - strand, within DvMF_0369 at 434.635 kb on - strand, within DvMF_0369 at 434.635 kb on - strand, within DvMF_0369 at 434.642 kb on + strand, within DvMF_0369 at 434.790 kb on - strand, within DvMF_0369 at 434.790 kb on - strand, within DvMF_0369 at 434.828 kb on - strand, within DvMF_0369 at 434.911 kb on + strand, within DvMF_0369 at 434.944 kb on + strand, within DvMF_0369 at 434.944 kb on - strand, within DvMF_0369 at 434.989 kb on + strand, within DvMF_0369 at 434.998 kb on - strand, within DvMF_0369 at 435.186 kb on + strand at 435.229 kb on + strand at 435.237 kb on - strand at 435.332 kb on - strand at 435.496 kb on + strand at 436.305 kb on + strand at 436.419 kb on + strand at 436.419 kb on + strand at 436.427 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 434,589 + DvMF_0369 0.11 -0.6 434,590 - DvMF_0369 0.11 -3.0 434,635 - DvMF_0369 0.17 -0.8 434,635 - DvMF_0369 0.17 -1.5 434,642 + DvMF_0369 0.18 +0.7 434,790 - DvMF_0369 0.38 +0.1 434,790 - DvMF_0369 0.38 -0.7 434,828 - DvMF_0369 0.43 +0.3 434,911 + DvMF_0369 0.54 -0.0 434,944 + DvMF_0369 0.58 -1.1 434,944 - DvMF_0369 0.58 +0.7 434,989 + DvMF_0369 0.64 -0.1 434,998 - DvMF_0369 0.65 -0.4 435,186 + +0.2 435,229 + -0.6 435,237 - +0.0 435,332 - -0.5 435,496 + -0.8 436,305 + -0.2 436,419 + -0.2 436,419 + -0.4 436,427 - -0.5
Or see this region's nucleotide sequence