Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purU and DvMF_0190 are separated by 212 nucleotides DvMF_0190 and DvMF_0191 are separated by 184 nucleotides DvMF_0191 and DvMF_0192 are separated by 625 nucleotides
DvMF_0189: purU - formyltetrahydrofolate deformylase (RefSeq), at 206,108 to 206,962
purU
DvMF_0190: DvMF_0190 - hypothetical protein (RefSeq), at 207,175 to 207,579
_0190
DvMF_0191: DvMF_0191 - hypothetical protein (RefSeq), at 207,764 to 208,000
_0191
DvMF_0192: DvMF_0192 - ATP-dependent helicase HrpB (RefSeq), at 208,626 to 211,379
_0192
Position (kb) 207
208
209 Strain fitness (log2 ratio) -1
0
1 at 206.861 kb on + strand, within purU at 207.032 kb on + strand at 207.063 kb on + strand at 207.076 kb on + strand at 207.086 kb on + strand at 207.300 kb on + strand, within DvMF_0190 at 207.472 kb on - strand, within DvMF_0190 at 207.503 kb on + strand, within DvMF_0190 at 207.529 kb on - strand, within DvMF_0190 at 207.714 kb on + strand at 207.910 kb on - strand, within DvMF_0191 at 207.981 kb on + strand at 208.249 kb on + strand at 208.257 kb on - strand at 208.695 kb on + strand at 208.809 kb on - strand at 208.944 kb on + strand, within DvMF_0192 at 208.960 kb on + strand, within DvMF_0192
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 206,861 + purU DvMF_0189 0.88 +0.0 207,032 + -0.4 207,063 + -0.5 207,076 + -0.5 207,086 + +0.7 207,300 + DvMF_0190 0.31 +0.4 207,472 - DvMF_0190 0.73 -0.2 207,503 + DvMF_0190 0.81 -0.7 207,529 - DvMF_0190 0.87 -0.4 207,714 + -0.7 207,910 - DvMF_0191 0.62 -0.2 207,981 + -0.3 208,249 + -0.0 208,257 - -0.1 208,695 + -0.2 208,809 - +0.8 208,944 + DvMF_0192 0.12 +0.0 208,960 + DvMF_0192 0.12 -0.1
Or see this region's nucleotide sequence