Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0059

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0058 and DvMF_0059 are separated by 225 nucleotidesDvMF_0059 and DvMF_0060 are separated by 128 nucleotides DvMF_0058: DvMF_0058 - YbbR family protein (RefSeq), at 75,535 to 76,434 _0058 DvMF_0059: DvMF_0059 - phosphoglucosamine mutase (RefSeq), at 76,660 to 78,012 _0059 DvMF_0060: DvMF_0060 - UTP-glucose-1-phosphate uridylyltransferase (RefSeq), at 78,141 to 79,016 _0060 Position (kb) 76 77 78 79Strain fitness (log2 ratio) -2 -1 0 1at 75.743 kb on - strand, within DvMF_0058at 76.091 kb on + strand, within DvMF_0058at 76.099 kb on - strand, within DvMF_0058at 76.451 kb on + strandat 76.452 kb on + strandat 76.480 kb on - strandat 76.480 kb on - strandat 76.518 kb on - strandat 76.527 kb on - strandat 76.537 kb on - strandat 76.539 kb on + strandat 76.557 kb on - strandat 78.001 kb on + strandat 78.364 kb on - strand, within DvMF_0060at 78.802 kb on - strand, within DvMF_0060at 78.918 kb on - strand, within DvMF_0060at 78.952 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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75,743 - DvMF_0058 0.23 -0.2
76,091 + DvMF_0058 0.62 -0.4
76,099 - DvMF_0058 0.63 -0.1
76,451 + -0.2
76,452 + +0.1
76,480 - -0.4
76,480 - +0.1
76,518 - -0.2
76,527 - -0.4
76,537 - -0.4
76,539 + -0.4
76,557 - -0.4
78,001 + -2.5
78,364 - DvMF_0060 0.25 -0.1
78,802 - DvMF_0060 0.75 -0.3
78,918 - DvMF_0060 0.89 -0.4
78,952 + -0.1

Or see this region's nucleotide sequence