Strain Fitness in Marinobacter adhaerens HP15 around HP15_828

Experiment: L-Glutamic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_826 and HP15_827 are separated by 102 nucleotidesHP15_827 and HP15_828 are separated by 178 nucleotidesHP15_828 and HP15_829 are separated by 48 nucleotides HP15_826: HP15_826 - lipoprotein, at 843,763 to 844,641 _826 HP15_827: HP15_827 - conserved hypothetical protein, membrane, at 844,744 to 845,025 _827 HP15_828: HP15_828 - conserved hypothetical protein, at 845,204 to 846,595 _828 HP15_829: HP15_829 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 846,644 to 848,146 _829 Position (kb) 845 846 847Strain fitness (log2 ratio) -2 -1 0 1 2at 844.209 kb on + strand, within HP15_826at 844.234 kb on + strand, within HP15_826at 844.234 kb on + strand, within HP15_826at 844.242 kb on - strand, within HP15_826at 844.265 kb on - strand, within HP15_826at 844.411 kb on + strand, within HP15_826at 844.465 kb on - strand, within HP15_826at 845.126 kb on + strandat 845.134 kb on - strandat 845.134 kb on - strandat 845.144 kb on - strandat 845.145 kb on - strandat 845.220 kb on + strandat 845.324 kb on - strandat 845.581 kb on + strand, within HP15_828at 845.589 kb on - strand, within HP15_828at 845.589 kb on - strand, within HP15_828at 845.645 kb on - strand, within HP15_828at 845.694 kb on + strand, within HP15_828at 845.814 kb on + strand, within HP15_828at 845.924 kb on + strand, within HP15_828at 845.924 kb on + strand, within HP15_828at 845.932 kb on - strand, within HP15_828at 845.956 kb on - strand, within HP15_828at 846.099 kb on - strand, within HP15_828at 846.157 kb on - strand, within HP15_828at 846.172 kb on + strand, within HP15_828at 846.426 kb on - strand, within HP15_828at 846.475 kb on + strandat 846.493 kb on - strandat 846.563 kb on - strandat 846.592 kb on + strandat 846.658 kb on + strandat 847.345 kb on + strand, within HP15_829at 847.502 kb on - strand, within HP15_829at 847.536 kb on + strand, within HP15_829

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic
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844,209 + HP15_826 0.51 +2.1
844,234 + HP15_826 0.54 +1.4
844,234 + HP15_826 0.54 +1.9
844,242 - HP15_826 0.54 +0.1
844,265 - HP15_826 0.57 -0.3
844,411 + HP15_826 0.74 -0.5
844,465 - HP15_826 0.80 +0.0
845,126 + -0.6
845,134 - -0.8
845,134 - -0.8
845,144 - -0.1
845,145 - -0.8
845,220 + -1.0
845,324 - +1.3
845,581 + HP15_828 0.27 +2.1
845,589 - HP15_828 0.28 +1.6
845,589 - HP15_828 0.28 +2.6
845,645 - HP15_828 0.32 +1.5
845,694 + HP15_828 0.35 -0.5
845,814 + HP15_828 0.44 +1.4
845,924 + HP15_828 0.52 +0.0
845,924 + HP15_828 0.52 +0.0
845,932 - HP15_828 0.52 +1.0
845,956 - HP15_828 0.54 -0.3
846,099 - HP15_828 0.64 +0.3
846,157 - HP15_828 0.68 -0.6
846,172 + HP15_828 0.70 -0.1
846,426 - HP15_828 0.88 +1.8
846,475 + -0.1
846,493 - +1.5
846,563 - +1.6
846,592 + +0.1
846,658 + +1.6
847,345 + HP15_829 0.47 +1.4
847,502 - HP15_829 0.57 -2.3
847,536 + HP15_829 0.59 -0.7

Or see this region's nucleotide sequence