Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4111

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4110 and Psest_4111 are separated by 36 nucleotidesPsest_4111 and Psest_4112 are separated by 57 nucleotidesPsest_4112 and Psest_4113 are separated by 142 nucleotidesPsest_4113 and Psest_4114 are separated by 39 nucleotides Psest_4110: Psest_4110 - Deoxycytidylate deaminase, at 4,293,484 to 4,295,079 _4110 Psest_4111: Psest_4111 - hypothetical protein, at 4,295,116 to 4,295,667 _4111 Psest_4112: Psest_4112 - hypothetical protein, at 4,295,725 to 4,295,994 _4112 Psest_4113: Psest_4113 - hypothetical protein, at 4,296,137 to 4,296,352 _4113 Psest_4114: Psest_4114 - hypothetical protein, at 4,296,392 to 4,296,730 _4114 Position (kb) 4295 4296Strain fitness (log2 ratio) -3 -2 -1 0 1at 4294.173 kb on + strand, within Psest_4110at 4294.174 kb on - strand, within Psest_4110at 4294.174 kb on - strand, within Psest_4110at 4294.188 kb on - strand, within Psest_4110at 4294.188 kb on - strand, within Psest_4110at 4294.238 kb on + strand, within Psest_4110at 4294.239 kb on - strand, within Psest_4110at 4294.239 kb on - strand, within Psest_4110at 4294.248 kb on + strand, within Psest_4110at 4294.248 kb on + strand, within Psest_4110at 4294.267 kb on + strand, within Psest_4110at 4294.267 kb on + strand, within Psest_4110at 4294.268 kb on - strand, within Psest_4110at 4294.268 kb on - strand, within Psest_4110at 4294.304 kb on + strand, within Psest_4110at 4294.304 kb on + strand, within Psest_4110at 4294.397 kb on - strand, within Psest_4110at 4294.398 kb on + strand, within Psest_4110at 4294.398 kb on + strand, within Psest_4110at 4294.398 kb on + strand, within Psest_4110at 4294.399 kb on - strand, within Psest_4110at 4294.399 kb on - strand, within Psest_4110at 4294.399 kb on - strand, within Psest_4110at 4294.511 kb on + strand, within Psest_4110at 4294.674 kb on + strand, within Psest_4110at 4294.674 kb on + strand, within Psest_4110at 4294.674 kb on + strand, within Psest_4110at 4294.674 kb on + strand, within Psest_4110at 4294.674 kb on + strand, within Psest_4110at 4294.675 kb on - strand, within Psest_4110at 4294.741 kb on + strand, within Psest_4110at 4294.742 kb on - strand, within Psest_4110at 4294.767 kb on - strand, within Psest_4110at 4294.922 kb on + strandat 4294.922 kb on + strandat 4294.923 kb on - strandat 4295.001 kb on + strandat 4295.001 kb on + strandat 4295.001 kb on + strandat 4295.092 kb on - strandat 4295.096 kb on - strandat 4295.117 kb on + strandat 4295.166 kb on + strandat 4295.167 kb on - strandat 4295.167 kb on - strandat 4295.215 kb on + strand, within Psest_4111at 4295.312 kb on + strand, within Psest_4111at 4295.312 kb on + strand, within Psest_4111at 4295.312 kb on + strand, within Psest_4111at 4295.312 kb on + strand, within Psest_4111at 4295.312 kb on + strand, within Psest_4111at 4295.312 kb on + strand, within Psest_4111at 4295.312 kb on + strand, within Psest_4111at 4295.312 kb on + strand, within Psest_4111at 4295.312 kb on + strand, within Psest_4111at 4295.312 kb on + strand, within Psest_4111at 4295.313 kb on - strand, within Psest_4111at 4295.313 kb on - strand, within Psest_4111at 4295.313 kb on - strand, within Psest_4111at 4295.313 kb on - strand, within Psest_4111at 4295.313 kb on - strand, within Psest_4111at 4295.313 kb on - strand, within Psest_4111at 4295.313 kb on - strand, within Psest_4111at 4295.313 kb on - strand, within Psest_4111at 4295.313 kb on - strand, within Psest_4111at 4295.359 kb on - strand, within Psest_4111at 4295.359 kb on - strand, within Psest_4111at 4295.419 kb on + strand, within Psest_4111at 4295.419 kb on + strand, within Psest_4111at 4295.419 kb on + strand, within Psest_4111at 4295.419 kb on + strand, within Psest_4111at 4295.419 kb on + strand, within Psest_4111at 4295.419 kb on + strand, within Psest_4111at 4295.419 kb on + strand, within Psest_4111at 4295.419 kb on + strand, within Psest_4111at 4295.420 kb on - strand, within Psest_4111at 4295.420 kb on - strand, within Psest_4111at 4295.420 kb on - strand, within Psest_4111at 4295.420 kb on - strand, within Psest_4111at 4295.422 kb on + strand, within Psest_4111at 4295.423 kb on - strand, within Psest_4111at 4295.554 kb on + strand, within Psest_4111at 4295.606 kb on - strand, within Psest_4111at 4295.606 kb on - strand, within Psest_4111at 4295.636 kb on + strandat 4295.637 kb on - strandat 4295.637 kb on - strandat 4295.637 kb on - strandat 4295.667 kb on + strandat 4295.667 kb on + strandat 4295.667 kb on + strandat 4295.667 kb on + strandat 4295.667 kb on + strandat 4295.668 kb on - strandat 4295.668 kb on - strandat 4295.668 kb on - strandat 4296.003 kb on - strandat 4296.102 kb on - strandat 4296.104 kb on - strandat 4296.104 kb on - strandat 4296.104 kb on - strandat 4296.116 kb on - strandat 4296.116 kb on - strandat 4296.116 kb on - strandat 4296.116 kb on - strandat 4296.116 kb on - strandat 4296.116 kb on - strandat 4296.116 kb on - strandat 4296.116 kb on - strandat 4296.150 kb on + strandat 4296.264 kb on - strand, within Psest_4113at 4296.264 kb on - strand, within Psest_4113at 4296.290 kb on + strand, within Psest_4113at 4296.290 kb on + strand, within Psest_4113at 4296.290 kb on + strand, within Psest_4113at 4296.290 kb on + strand, within Psest_4113at 4296.290 kb on + strand, within Psest_4113at 4296.290 kb on + strand, within Psest_4113at 4296.290 kb on + strand, within Psest_4113at 4296.290 kb on + strand, within Psest_4113at 4296.290 kb on + strand, within Psest_4113at 4296.290 kb on + strand, within Psest_4113at 4296.290 kb on + strand, within Psest_4113at 4296.290 kb on + strand, within Psest_4113at 4296.290 kb on + strand, within Psest_4113at 4296.290 kb on + strand, within Psest_4113at 4296.291 kb on - strand, within Psest_4113at 4296.291 kb on - strand, within Psest_4113at 4296.291 kb on - strand, within Psest_4113at 4296.291 kb on - strand, within Psest_4113at 4296.291 kb on - strand, within Psest_4113at 4296.291 kb on - strand, within Psest_4113at 4296.291 kb on - strand, within Psest_4113at 4296.291 kb on - strand, within Psest_4113at 4296.320 kb on - strand, within Psest_4113at 4296.391 kb on + strandat 4296.391 kb on + strandat 4296.391 kb on + strandat 4296.391 kb on + strandat 4296.391 kb on + strandat 4296.391 kb on + strandat 4296.391 kb on + strandat 4296.391 kb on + strandat 4296.391 kb on + strandat 4296.391 kb on + strandat 4296.391 kb on + strandat 4296.391 kb on + strandat 4296.391 kb on + strandat 4296.391 kb on + strandat 4296.391 kb on + strandat 4296.391 kb on + strandat 4296.392 kb on - strandat 4296.392 kb on - strandat 4296.392 kb on - strandat 4296.392 kb on - strandat 4296.392 kb on - strandat 4296.392 kb on - strandat 4296.392 kb on - strandat 4296.392 kb on - strandat 4296.392 kb on - strandat 4296.392 kb on - strandat 4296.392 kb on - strandat 4296.392 kb on - strandat 4296.411 kb on - strandat 4296.613 kb on + strand, within Psest_4114at 4296.614 kb on - strand, within Psest_4114

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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4,294,173 + Psest_4110 0.43 -0.8
4,294,174 - Psest_4110 0.43 -0.3
4,294,174 - Psest_4110 0.43 -2.0
4,294,188 - Psest_4110 0.44 -0.6
4,294,188 - Psest_4110 0.44 +0.0
4,294,238 + Psest_4110 0.47 -0.4
4,294,239 - Psest_4110 0.47 -0.4
4,294,239 - Psest_4110 0.47 -1.2
4,294,248 + Psest_4110 0.48 -1.0
4,294,248 + Psest_4110 0.48 -1.3
4,294,267 + Psest_4110 0.49 +1.4
4,294,267 + Psest_4110 0.49 -0.7
4,294,268 - Psest_4110 0.49 -0.7
4,294,268 - Psest_4110 0.49 -0.9
4,294,304 + Psest_4110 0.51 -0.4
4,294,304 + Psest_4110 0.51 -0.3
4,294,397 - Psest_4110 0.57 -0.7
4,294,398 + Psest_4110 0.57 -2.5
4,294,398 + Psest_4110 0.57 -0.4
4,294,398 + Psest_4110 0.57 -1.3
4,294,399 - Psest_4110 0.57 -0.5
4,294,399 - Psest_4110 0.57 -1.7
4,294,399 - Psest_4110 0.57 -1.3
4,294,511 + Psest_4110 0.64 -2.1
4,294,674 + Psest_4110 0.75 -0.3
4,294,674 + Psest_4110 0.75 -0.2
4,294,674 + Psest_4110 0.75 -1.4
4,294,674 + Psest_4110 0.75 -1.7
4,294,674 + Psest_4110 0.75 -1.3
4,294,675 - Psest_4110 0.75 +0.5
4,294,741 + Psest_4110 0.79 -0.8
4,294,742 - Psest_4110 0.79 -0.7
4,294,767 - Psest_4110 0.80 -0.9
4,294,922 + -0.4
4,294,922 + -1.1
4,294,923 - -0.6
4,295,001 + -0.2
4,295,001 + -0.9
4,295,001 + -0.5
4,295,092 - -0.5
4,295,096 - -0.9
4,295,117 + -0.2
4,295,166 + +1.4
4,295,167 - -1.0
4,295,167 - -0.7
4,295,215 + Psest_4111 0.18 -0.7
4,295,312 + Psest_4111 0.36 -1.4
4,295,312 + Psest_4111 0.36 -0.3
4,295,312 + Psest_4111 0.36 -0.5
4,295,312 + Psest_4111 0.36 +0.5
4,295,312 + Psest_4111 0.36 -0.1
4,295,312 + Psest_4111 0.36 -0.9
4,295,312 + Psest_4111 0.36 -0.8
4,295,312 + Psest_4111 0.36 -0.5
4,295,312 + Psest_4111 0.36 -1.8
4,295,312 + Psest_4111 0.36 -0.8
4,295,313 - Psest_4111 0.36 -0.7
4,295,313 - Psest_4111 0.36 -0.2
4,295,313 - Psest_4111 0.36 -1.3
4,295,313 - Psest_4111 0.36 -0.9
4,295,313 - Psest_4111 0.36 -0.5
4,295,313 - Psest_4111 0.36 -0.2
4,295,313 - Psest_4111 0.36 -1.7
4,295,313 - Psest_4111 0.36 -2.0
4,295,313 - Psest_4111 0.36 -0.9
4,295,359 - Psest_4111 0.44 +0.5
4,295,359 - Psest_4111 0.44 -1.2
4,295,419 + Psest_4111 0.55 -0.8
4,295,419 + Psest_4111 0.55 -0.4
4,295,419 + Psest_4111 0.55 -0.9
4,295,419 + Psest_4111 0.55 -0.2
4,295,419 + Psest_4111 0.55 -2.5
4,295,419 + Psest_4111 0.55 -1.2
4,295,419 + Psest_4111 0.55 -2.5
4,295,419 + Psest_4111 0.55 +0.4
4,295,420 - Psest_4111 0.55 -0.3
4,295,420 - Psest_4111 0.55 -1.4
4,295,420 - Psest_4111 0.55 -0.2
4,295,420 - Psest_4111 0.55 -1.1
4,295,422 + Psest_4111 0.55 -0.5
4,295,423 - Psest_4111 0.56 -1.5
4,295,554 + Psest_4111 0.79 -0.9
4,295,606 - Psest_4111 0.89 -1.2
4,295,606 - Psest_4111 0.89 -1.6
4,295,636 + -0.9
4,295,637 - -1.2
4,295,637 - +0.8
4,295,637 - -3.1
4,295,667 + -1.3
4,295,667 + -0.8
4,295,667 + -0.7
4,295,667 + -1.4
4,295,667 + -1.2
4,295,668 - -0.6
4,295,668 - -1.0
4,295,668 - -0.5
4,296,003 - -0.7
4,296,102 - -2.1
4,296,104 - -0.5
4,296,104 - -0.5
4,296,104 - -0.7
4,296,116 - -0.8
4,296,116 - -1.1
4,296,116 - -0.8
4,296,116 - -0.1
4,296,116 - +0.1
4,296,116 - -1.2
4,296,116 - -1.1
4,296,116 - -0.2
4,296,150 + -0.0
4,296,264 - Psest_4113 0.59 -0.4
4,296,264 - Psest_4113 0.59 -0.2
4,296,290 + Psest_4113 0.71 +0.3
4,296,290 + Psest_4113 0.71 +0.4
4,296,290 + Psest_4113 0.71 -0.1
4,296,290 + Psest_4113 0.71 +0.4
4,296,290 + Psest_4113 0.71 +0.6
4,296,290 + Psest_4113 0.71 +0.3
4,296,290 + Psest_4113 0.71 +0.8
4,296,290 + Psest_4113 0.71 -0.4
4,296,290 + Psest_4113 0.71 +0.7
4,296,290 + Psest_4113 0.71 +0.7
4,296,290 + Psest_4113 0.71 +1.1
4,296,290 + Psest_4113 0.71 +0.3
4,296,290 + Psest_4113 0.71 +0.6
4,296,290 + Psest_4113 0.71 +0.5
4,296,291 - Psest_4113 0.71 -0.1
4,296,291 - Psest_4113 0.71 -1.4
4,296,291 - Psest_4113 0.71 -0.7
4,296,291 - Psest_4113 0.71 -0.5
4,296,291 - Psest_4113 0.71 -0.5
4,296,291 - Psest_4113 0.71 -0.7
4,296,291 - Psest_4113 0.71 -0.8
4,296,291 - Psest_4113 0.71 -1.9
4,296,320 - Psest_4113 0.85 -0.8
4,296,391 + -0.5
4,296,391 + +0.1
4,296,391 + -1.4
4,296,391 + -0.4
4,296,391 + -0.9
4,296,391 + +0.2
4,296,391 + -1.1
4,296,391 + -0.2
4,296,391 + -1.0
4,296,391 + -0.5
4,296,391 + -0.5
4,296,391 + +0.7
4,296,391 + -0.5
4,296,391 + -0.5
4,296,391 + -0.1
4,296,391 + -0.4
4,296,392 - +0.1
4,296,392 - -0.4
4,296,392 - -1.4
4,296,392 - -1.1
4,296,392 - -1.2
4,296,392 - -1.0
4,296,392 - +1.1
4,296,392 - -2.1
4,296,392 - -0.4
4,296,392 - -0.9
4,296,392 - -1.1
4,296,392 - -0.5
4,296,411 - -1.3
4,296,613 + Psest_4114 0.65 -0.3
4,296,614 - Psest_4114 0.65 -0.2

Or see this region's nucleotide sequence