Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0390 and Psest_0391 are separated by 436 nucleotides Psest_0391 and Psest_0392 are separated by 195 nucleotides
Psest_0390: Psest_0390 - Short-chain dehydrogenases of various substrate specificities, at 417,981 to 418,973
_0390
Psest_0391: Psest_0391 - Uncharacterized homolog of Blt101, at 419,410 to 419,568
_0391
Psest_0392: Psest_0392 - Signal transduction histidine kinase, at 419,764 to 423,273
_0392
Position (kb) 419
420 Strain fitness (log2 ratio) -2
-1
0
1
2 at 418.639 kb on + strand, within Psest_0390 at 418.639 kb on + strand, within Psest_0390 at 418.640 kb on - strand, within Psest_0390 at 418.640 kb on - strand, within Psest_0390 at 418.973 kb on + strand at 418.974 kb on - strand at 419.219 kb on + strand at 419.220 kb on - strand at 419.220 kb on - strand at 419.220 kb on - strand at 419.220 kb on - strand at 419.220 kb on - strand at 419.369 kb on + strand at 419.653 kb on - strand at 419.653 kb on - strand at 419.653 kb on - strand at 419.655 kb on + strand at 419.656 kb on - strand at 419.685 kb on - strand at 419.804 kb on + strand at 419.814 kb on + strand at 419.875 kb on + strand at 419.875 kb on + strand at 419.875 kb on + strand at 419.876 kb on - strand at 419.876 kb on - strand at 419.876 kb on - strand at 419.878 kb on + strand at 419.878 kb on + strand at 419.878 kb on + strand at 419.878 kb on + strand at 419.878 kb on + strand at 419.878 kb on + strand at 419.879 kb on - strand at 420.070 kb on + strand at 420.193 kb on + strand, within Psest_0392 at 420.193 kb on + strand, within Psest_0392 at 420.193 kb on + strand, within Psest_0392 at 420.193 kb on + strand, within Psest_0392 at 420.294 kb on + strand, within Psest_0392 at 420.295 kb on - strand, within Psest_0392 at 420.295 kb on - strand, within Psest_0392 at 420.370 kb on + strand, within Psest_0392 at 420.370 kb on + strand, within Psest_0392 at 420.370 kb on + strand, within Psest_0392 at 420.370 kb on + strand, within Psest_0392 at 420.371 kb on - strand, within Psest_0392 at 420.371 kb on - strand, within Psest_0392 at 420.371 kb on - strand, within Psest_0392 at 420.409 kb on + strand, within Psest_0392 at 420.409 kb on + strand, within Psest_0392 at 420.409 kb on + strand, within Psest_0392 at 420.409 kb on + strand, within Psest_0392 at 420.410 kb on - strand, within Psest_0392 at 420.410 kb on - strand, within Psest_0392 at 420.410 kb on - strand, within Psest_0392 at 420.410 kb on - strand, within Psest_0392 at 420.563 kb on - strand, within Psest_0392
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 418,639 + Psest_0390 0.66 +1.8 418,639 + Psest_0390 0.66 +0.8 418,640 - Psest_0390 0.66 -0.3 418,640 - Psest_0390 0.66 +1.3 418,973 + +1.3 418,974 - +0.2 419,219 + +2.1 419,220 - -1.1 419,220 - +0.3 419,220 - -0.6 419,220 - -0.7 419,220 - +0.0 419,369 + +1.1 419,653 - -0.3 419,653 - -0.9 419,653 - -0.8 419,655 + +0.4 419,656 - +0.7 419,685 - +1.3 419,804 + +1.3 419,814 + -1.1 419,875 + -1.4 419,875 + -1.2 419,875 + -1.2 419,876 - -0.7 419,876 - -0.3 419,876 - -1.6 419,878 + -0.0 419,878 + -1.9 419,878 + -1.5 419,878 + -0.3 419,878 + -0.6 419,878 + +0.6 419,879 - -0.3 420,070 + -1.8 420,193 + Psest_0392 0.12 -0.5 420,193 + Psest_0392 0.12 -2.7 420,193 + Psest_0392 0.12 -0.5 420,193 + Psest_0392 0.12 -0.6 420,294 + Psest_0392 0.15 -1.6 420,295 - Psest_0392 0.15 +1.3 420,295 - Psest_0392 0.15 +0.1 420,370 + Psest_0392 0.17 -1.4 420,370 + Psest_0392 0.17 -0.7 420,370 + Psest_0392 0.17 -1.1 420,370 + Psest_0392 0.17 -1.4 420,371 - Psest_0392 0.17 -0.8 420,371 - Psest_0392 0.17 +0.3 420,371 - Psest_0392 0.17 -0.7 420,409 + Psest_0392 0.18 -1.1 420,409 + Psest_0392 0.18 -0.3 420,409 + Psest_0392 0.18 -1.2 420,409 + Psest_0392 0.18 -0.3 420,410 - Psest_0392 0.18 -0.3 420,410 - Psest_0392 0.18 -0.3 420,410 - Psest_0392 0.18 +0.3 420,410 - Psest_0392 0.18 +0.1 420,563 - Psest_0392 0.23 -0.7
Or see this region's nucleotide sequence