Experiment: L-Glutamic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3731 and HP15_3732 are separated by 281 nucleotides HP15_3732 and HP15_3733 are separated by 59 nucleotides HP15_3733 and HP15_3734 overlap by 4 nucleotides HP15_3734 and HP15_3735 are separated by 45 nucleotides
HP15_3731: HP15_3731 - sulfide-quinone reductase, at 3,952,547 to 3,953,815
_3731
HP15_3732: HP15_3732 - metallo-beta-lactamase family protein, at 3,954,097 to 3,955,005
_3732
HP15_3733: HP15_3733 - hypothetical protein, at 3,955,065 to 3,955,175
_3733
HP15_3734: HP15_3734 - conserved hypothetical protein, secreted, at 3,955,172 to 3,955,615
_3734
HP15_3735: HP15_3735 - rhodanese domain protein-like protein, at 3,955,661 to 3,956,224
_3735
Position (kb)
3954
3955
3956 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3953.124 kb on - strand, within HP15_3731 at 3953.171 kb on - strand, within HP15_3731 at 3953.213 kb on - strand, within HP15_3731 at 3953.213 kb on - strand, within HP15_3731 at 3953.245 kb on - strand, within HP15_3731 at 3953.396 kb on + strand, within HP15_3731 at 3953.431 kb on + strand, within HP15_3731 at 3953.451 kb on + strand, within HP15_3731 at 3953.480 kb on + strand, within HP15_3731 at 3953.590 kb on + strand, within HP15_3731 at 3953.598 kb on - strand, within HP15_3731 at 3953.610 kb on - strand, within HP15_3731 at 3953.637 kb on - strand, within HP15_3731 at 3953.771 kb on + strand at 3953.824 kb on + strand at 3953.824 kb on + strand at 3953.824 kb on - strand at 3953.845 kb on + strand at 3954.221 kb on - strand, within HP15_3732 at 3954.280 kb on + strand, within HP15_3732 at 3954.342 kb on + strand, within HP15_3732 at 3954.375 kb on - strand, within HP15_3732 at 3954.375 kb on - strand, within HP15_3732 at 3954.382 kb on - strand, within HP15_3732 at 3954.387 kb on + strand, within HP15_3732 at 3954.540 kb on - strand, within HP15_3732 at 3954.540 kb on - strand, within HP15_3732 at 3954.560 kb on + strand, within HP15_3732 at 3954.560 kb on + strand, within HP15_3732 at 3954.568 kb on - strand, within HP15_3732 at 3954.568 kb on - strand, within HP15_3732 at 3954.568 kb on - strand, within HP15_3732 at 3954.588 kb on + strand, within HP15_3732 at 3954.685 kb on - strand, within HP15_3732 at 3954.701 kb on + strand, within HP15_3732 at 3954.777 kb on - strand, within HP15_3732 at 3954.847 kb on - strand, within HP15_3732 at 3954.906 kb on + strand, within HP15_3732 at 3954.912 kb on + strand, within HP15_3732 at 3954.989 kb on - strand at 3954.990 kb on - strand at 3955.005 kb on + strand at 3955.008 kb on - strand at 3955.078 kb on + strand, within HP15_3733 at 3955.210 kb on + strand at 3955.245 kb on + strand, within HP15_3734 at 3955.253 kb on - strand, within HP15_3734 at 3955.330 kb on + strand, within HP15_3734 at 3955.486 kb on + strand, within HP15_3734 at 3955.494 kb on - strand, within HP15_3734 at 3955.510 kb on - strand, within HP15_3734 at 3955.550 kb on - strand, within HP15_3734 at 3955.636 kb on - strand at 3955.648 kb on + strand at 3955.648 kb on - strand at 3955.692 kb on + strand at 3955.698 kb on + strand at 3955.706 kb on - strand at 3955.814 kb on - strand, within HP15_3735 at 3955.902 kb on + strand, within HP15_3735
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic remove 3,953,124 - HP15_3731 0.45 -0.1 3,953,171 - HP15_3731 0.49 -0.5 3,953,213 - HP15_3731 0.52 -0.1 3,953,213 - HP15_3731 0.52 +2.2 3,953,245 - HP15_3731 0.55 +1.7 3,953,396 + HP15_3731 0.67 +1.7 3,953,431 + HP15_3731 0.70 -0.2 3,953,451 + HP15_3731 0.71 -0.4 3,953,480 + HP15_3731 0.74 +2.2 3,953,590 + HP15_3731 0.82 +1.1 3,953,598 - HP15_3731 0.83 -0.4 3,953,610 - HP15_3731 0.84 +0.0 3,953,637 - HP15_3731 0.86 -0.7 3,953,771 + +1.5 3,953,824 + +1.3 3,953,824 + +0.1 3,953,824 - -0.3 3,953,845 + -0.5 3,954,221 - HP15_3732 0.14 +1.7 3,954,280 + HP15_3732 0.20 -0.8 3,954,342 + HP15_3732 0.27 +1.4 3,954,375 - HP15_3732 0.31 -2.1 3,954,375 - HP15_3732 0.31 -0.2 3,954,382 - HP15_3732 0.31 +2.1 3,954,387 + HP15_3732 0.32 +1.3 3,954,540 - HP15_3732 0.49 +1.6 3,954,540 - HP15_3732 0.49 -0.6 3,954,560 + HP15_3732 0.51 +1.6 3,954,560 + HP15_3732 0.51 -0.2 3,954,568 - HP15_3732 0.52 +1.2 3,954,568 - HP15_3732 0.52 +1.6 3,954,568 - HP15_3732 0.52 -0.7 3,954,588 + HP15_3732 0.54 +1.1 3,954,685 - HP15_3732 0.65 +1.6 3,954,701 + HP15_3732 0.66 +1.0 3,954,777 - HP15_3732 0.75 +2.2 3,954,847 - HP15_3732 0.83 +3.9 3,954,906 + HP15_3732 0.89 -0.6 3,954,912 + HP15_3732 0.90 -0.9 3,954,989 - +3.2 3,954,990 - +0.3 3,955,005 + +1.5 3,955,008 - -0.2 3,955,078 + HP15_3733 0.12 -0.5 3,955,210 + +0.4 3,955,245 + HP15_3734 0.16 -1.2 3,955,253 - HP15_3734 0.18 -0.2 3,955,330 + HP15_3734 0.36 +0.3 3,955,486 + HP15_3734 0.71 +0.7 3,955,494 - HP15_3734 0.73 +0.1 3,955,510 - HP15_3734 0.76 +2.0 3,955,550 - HP15_3734 0.85 +3.1 3,955,636 - +1.7 3,955,648 + +0.0 3,955,648 - -0.1 3,955,692 + +0.2 3,955,698 + -0.5 3,955,706 - -0.6 3,955,814 - HP15_3735 0.27 +1.5 3,955,902 + HP15_3735 0.43 +1.5
Or see this region's nucleotide sequence