Experiment: L-Glutamic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3552 and HP15_3553 are separated by 61 nucleotides HP15_3553 and HP15_3554 are separated by 300 nucleotides
HP15_3552: HP15_3552 - exoribonuclease R, at 3,741,721 to 3,743,706
_3552
HP15_3553: HP15_3553 - conserved hypothetical protein, at 3,743,768 to 3,743,968
_3553
HP15_3554: HP15_3554 - carboxyl-terminal protease-like protein, at 3,744,269 to 3,745,750
_3554
Position (kb)
3743
3744 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3742.943 kb on - strand, within HP15_3552 at 3743.055 kb on - strand, within HP15_3552 at 3743.146 kb on - strand, within HP15_3552 at 3743.168 kb on - strand, within HP15_3552 at 3743.232 kb on - strand, within HP15_3552 at 3743.282 kb on - strand, within HP15_3552 at 3743.344 kb on + strand, within HP15_3552 at 3743.344 kb on + strand, within HP15_3552 at 3743.383 kb on - strand, within HP15_3552 at 3743.444 kb on + strand, within HP15_3552 at 3743.452 kb on + strand, within HP15_3552 at 3743.534 kb on + strand at 3743.542 kb on - strand at 3743.880 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.905 kb on - strand, within HP15_3553 at 3744.132 kb on + strand at 3744.250 kb on + strand at 3744.274 kb on + strand at 3744.311 kb on - strand at 3744.348 kb on - strand at 3744.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic remove 3,742,943 - HP15_3552 0.62 -0.0 3,743,055 - HP15_3552 0.67 +1.7 3,743,146 - HP15_3552 0.72 +2.0 3,743,168 - HP15_3552 0.73 +1.4 3,743,232 - HP15_3552 0.76 +1.3 3,743,282 - HP15_3552 0.79 +1.7 3,743,344 + HP15_3552 0.82 -0.1 3,743,344 + HP15_3552 0.82 +2.3 3,743,383 - HP15_3552 0.84 +0.7 3,743,444 + HP15_3552 0.87 +1.2 3,743,452 + HP15_3552 0.87 +2.1 3,743,534 + +2.8 3,743,542 - +0.4 3,743,880 + HP15_3553 0.56 -0.9 3,743,897 + HP15_3553 0.64 -0.0 3,743,897 + HP15_3553 0.64 +0.9 3,743,897 + HP15_3553 0.64 +1.3 3,743,897 + HP15_3553 0.64 -0.6 3,743,897 + HP15_3553 0.64 -0.6 3,743,905 - HP15_3553 0.68 -0.9 3,744,132 + -1.0 3,744,250 + +0.8 3,744,274 + +0.4 3,744,311 - -0.4 3,744,348 - -0.0 3,744,373 - +1.8
Or see this region's nucleotide sequence