Experiment: L-Glutamic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3236 and HP15_3237 overlap by 4 nucleotides HP15_3237 and HP15_3238 are separated by 13 nucleotides HP15_3238 and HP15_3239 are separated by 7 nucleotides
HP15_3236: HP15_3236 - membrane protein containing DUF1538, at 3,390,171 to 3,391,631
_3236
HP15_3237: HP15_3237 - nitrogen regulatory protein P-II family protein-like protein, at 3,391,628 to 3,391,978
_3237
HP15_3238: HP15_3238 - protein containing cystathionine beta-synthase, core domain, at 3,391,992 to 3,392,381
_3238
HP15_3239: HP15_3239 - ion channel DMI1, at 3,392,389 to 3,394,335
_3239
Position (kb)
3391
3392 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3390.686 kb on + strand, within HP15_3236 at 3390.766 kb on + strand, within HP15_3236 at 3390.774 kb on - strand, within HP15_3236 at 3390.815 kb on + strand, within HP15_3236 at 3390.851 kb on - strand, within HP15_3236 at 3390.864 kb on + strand, within HP15_3236 at 3390.879 kb on - strand, within HP15_3236 at 3391.046 kb on + strand, within HP15_3236 at 3391.047 kb on + strand, within HP15_3236 at 3391.059 kb on + strand, within HP15_3236 at 3391.059 kb on + strand, within HP15_3236 at 3391.067 kb on - strand, within HP15_3236 at 3391.113 kb on - strand, within HP15_3236 at 3391.133 kb on + strand, within HP15_3236 at 3391.235 kb on + strand, within HP15_3236 at 3391.278 kb on - strand, within HP15_3236 at 3391.401 kb on + strand, within HP15_3236 at 3391.452 kb on - strand, within HP15_3236 at 3391.493 kb on - strand at 3391.506 kb on - strand at 3391.523 kb on - strand at 3391.556 kb on - strand at 3391.557 kb on - strand at 3391.670 kb on + strand, within HP15_3237 at 3391.774 kb on + strand, within HP15_3237 at 3391.881 kb on + strand, within HP15_3237 at 3391.894 kb on - strand, within HP15_3237 at 3391.923 kb on + strand, within HP15_3237 at 3391.941 kb on - strand, within HP15_3237 at 3391.967 kb on + strand at 3391.987 kb on - strand at 3392.076 kb on + strand, within HP15_3238 at 3392.076 kb on + strand, within HP15_3238 at 3392.076 kb on + strand, within HP15_3238 at 3392.369 kb on - strand at 3392.409 kb on - strand at 3392.411 kb on - strand at 3392.435 kb on + strand at 3392.757 kb on + strand, within HP15_3239 at 3392.774 kb on - strand, within HP15_3239 at 3392.812 kb on + strand, within HP15_3239 at 3392.859 kb on + strand, within HP15_3239 at 3392.872 kb on - strand, within HP15_3239 at 3392.884 kb on + strand, within HP15_3239 at 3392.893 kb on + strand, within HP15_3239 at 3392.906 kb on - strand, within HP15_3239 at 3392.953 kb on + strand, within HP15_3239
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic remove 3,390,686 + HP15_3236 0.35 -0.2 3,390,766 + HP15_3236 0.41 -0.6 3,390,774 - HP15_3236 0.41 +1.6 3,390,815 + HP15_3236 0.44 -0.6 3,390,851 - HP15_3236 0.47 +1.0 3,390,864 + HP15_3236 0.47 +0.1 3,390,879 - HP15_3236 0.48 -0.4 3,391,046 + HP15_3236 0.60 -0.3 3,391,047 + HP15_3236 0.60 -0.4 3,391,059 + HP15_3236 0.61 -0.4 3,391,059 + HP15_3236 0.61 -0.5 3,391,067 - HP15_3236 0.61 +1.7 3,391,113 - HP15_3236 0.64 -0.3 3,391,133 + HP15_3236 0.66 +1.7 3,391,235 + HP15_3236 0.73 +3.7 3,391,278 - HP15_3236 0.76 +1.5 3,391,401 + HP15_3236 0.84 -0.1 3,391,452 - HP15_3236 0.88 +1.6 3,391,493 - -0.7 3,391,506 - -0.4 3,391,523 - +1.7 3,391,556 - +1.4 3,391,557 - +1.5 3,391,670 + HP15_3237 0.12 +1.4 3,391,774 + HP15_3237 0.42 -0.3 3,391,881 + HP15_3237 0.72 -0.6 3,391,894 - HP15_3237 0.76 -1.1 3,391,923 + HP15_3237 0.84 -0.6 3,391,941 - HP15_3237 0.89 +0.1 3,391,967 + +0.2 3,391,987 - -0.5 3,392,076 + HP15_3238 0.22 +1.7 3,392,076 + HP15_3238 0.22 -0.4 3,392,076 + HP15_3238 0.22 +0.2 3,392,369 - +0.1 3,392,409 - -0.6 3,392,411 - -0.9 3,392,435 + -3.2 3,392,757 + HP15_3239 0.19 +0.3 3,392,774 - HP15_3239 0.20 -1.0 3,392,812 + HP15_3239 0.22 -1.1 3,392,859 + HP15_3239 0.24 -0.4 3,392,872 - HP15_3239 0.25 -0.2 3,392,884 + HP15_3239 0.25 -0.8 3,392,893 + HP15_3239 0.26 +1.7 3,392,906 - HP15_3239 0.27 +1.6 3,392,953 + HP15_3239 0.29 -0.4
Or see this region's nucleotide sequence