Strain Fitness in Marinobacter adhaerens HP15 around HP15_3237

Experiment: L-Glutamic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3236 and HP15_3237 overlap by 4 nucleotidesHP15_3237 and HP15_3238 are separated by 13 nucleotidesHP15_3238 and HP15_3239 are separated by 7 nucleotides HP15_3236: HP15_3236 - membrane protein containing DUF1538, at 3,390,171 to 3,391,631 _3236 HP15_3237: HP15_3237 - nitrogen regulatory protein P-II family protein-like protein, at 3,391,628 to 3,391,978 _3237 HP15_3238: HP15_3238 - protein containing cystathionine beta-synthase, core domain, at 3,391,992 to 3,392,381 _3238 HP15_3239: HP15_3239 - ion channel DMI1, at 3,392,389 to 3,394,335 _3239 Position (kb) 3391 3392Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3390.686 kb on + strand, within HP15_3236at 3390.766 kb on + strand, within HP15_3236at 3390.774 kb on - strand, within HP15_3236at 3390.815 kb on + strand, within HP15_3236at 3390.851 kb on - strand, within HP15_3236at 3390.864 kb on + strand, within HP15_3236at 3390.879 kb on - strand, within HP15_3236at 3391.046 kb on + strand, within HP15_3236at 3391.047 kb on + strand, within HP15_3236at 3391.059 kb on + strand, within HP15_3236at 3391.059 kb on + strand, within HP15_3236at 3391.067 kb on - strand, within HP15_3236at 3391.113 kb on - strand, within HP15_3236at 3391.133 kb on + strand, within HP15_3236at 3391.235 kb on + strand, within HP15_3236at 3391.278 kb on - strand, within HP15_3236at 3391.401 kb on + strand, within HP15_3236at 3391.452 kb on - strand, within HP15_3236at 3391.493 kb on - strandat 3391.506 kb on - strandat 3391.523 kb on - strandat 3391.556 kb on - strandat 3391.557 kb on - strandat 3391.670 kb on + strand, within HP15_3237at 3391.774 kb on + strand, within HP15_3237at 3391.881 kb on + strand, within HP15_3237at 3391.894 kb on - strand, within HP15_3237at 3391.923 kb on + strand, within HP15_3237at 3391.941 kb on - strand, within HP15_3237at 3391.967 kb on + strandat 3391.987 kb on - strandat 3392.076 kb on + strand, within HP15_3238at 3392.076 kb on + strand, within HP15_3238at 3392.076 kb on + strand, within HP15_3238at 3392.369 kb on - strandat 3392.409 kb on - strandat 3392.411 kb on - strandat 3392.435 kb on + strandat 3392.757 kb on + strand, within HP15_3239at 3392.774 kb on - strand, within HP15_3239at 3392.812 kb on + strand, within HP15_3239at 3392.859 kb on + strand, within HP15_3239at 3392.872 kb on - strand, within HP15_3239at 3392.884 kb on + strand, within HP15_3239at 3392.893 kb on + strand, within HP15_3239at 3392.906 kb on - strand, within HP15_3239at 3392.953 kb on + strand, within HP15_3239

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic
remove
3,390,686 + HP15_3236 0.35 -0.2
3,390,766 + HP15_3236 0.41 -0.6
3,390,774 - HP15_3236 0.41 +1.6
3,390,815 + HP15_3236 0.44 -0.6
3,390,851 - HP15_3236 0.47 +1.0
3,390,864 + HP15_3236 0.47 +0.1
3,390,879 - HP15_3236 0.48 -0.4
3,391,046 + HP15_3236 0.60 -0.3
3,391,047 + HP15_3236 0.60 -0.4
3,391,059 + HP15_3236 0.61 -0.4
3,391,059 + HP15_3236 0.61 -0.5
3,391,067 - HP15_3236 0.61 +1.7
3,391,113 - HP15_3236 0.64 -0.3
3,391,133 + HP15_3236 0.66 +1.7
3,391,235 + HP15_3236 0.73 +3.7
3,391,278 - HP15_3236 0.76 +1.5
3,391,401 + HP15_3236 0.84 -0.1
3,391,452 - HP15_3236 0.88 +1.6
3,391,493 - -0.7
3,391,506 - -0.4
3,391,523 - +1.7
3,391,556 - +1.4
3,391,557 - +1.5
3,391,670 + HP15_3237 0.12 +1.4
3,391,774 + HP15_3237 0.42 -0.3
3,391,881 + HP15_3237 0.72 -0.6
3,391,894 - HP15_3237 0.76 -1.1
3,391,923 + HP15_3237 0.84 -0.6
3,391,941 - HP15_3237 0.89 +0.1
3,391,967 + +0.2
3,391,987 - -0.5
3,392,076 + HP15_3238 0.22 +1.7
3,392,076 + HP15_3238 0.22 -0.4
3,392,076 + HP15_3238 0.22 +0.2
3,392,369 - +0.1
3,392,409 - -0.6
3,392,411 - -0.9
3,392,435 + -3.2
3,392,757 + HP15_3239 0.19 +0.3
3,392,774 - HP15_3239 0.20 -1.0
3,392,812 + HP15_3239 0.22 -1.1
3,392,859 + HP15_3239 0.24 -0.4
3,392,872 - HP15_3239 0.25 -0.2
3,392,884 + HP15_3239 0.25 -0.8
3,392,893 + HP15_3239 0.26 +1.7
3,392,906 - HP15_3239 0.27 +1.6
3,392,953 + HP15_3239 0.29 -0.4

Or see this region's nucleotide sequence