Experiment: L-Glutamic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2556 and HP15_2557 are separated by 94 nucleotides HP15_2557 and HP15_2558 overlap by 23 nucleotides HP15_2558 and HP15_2559 are separated by 13 nucleotides
HP15_2556: HP15_2556 - lysophospholipase, at 2,702,682 to 2,703,689
_2556
HP15_2557: HP15_2557 - alpha/beta hydrolase fold-3 domain protein, at 2,703,784 to 2,704,677
_2557
HP15_2558: HP15_2558 - putative nuclease, at 2,704,655 to 2,704,909
_2558
HP15_2559: HP15_2559 - membrane protein containing DUF6, transmembrane, at 2,704,923 to 2,705,828
_2559
Position (kb)
2703
2704
2705 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2702.862 kb on - strand, within HP15_2556 at 2702.862 kb on - strand, within HP15_2556 at 2702.871 kb on - strand, within HP15_2556 at 2702.908 kb on + strand, within HP15_2556 at 2702.921 kb on - strand, within HP15_2556 at 2702.962 kb on + strand, within HP15_2556 at 2703.018 kb on + strand, within HP15_2556 at 2703.024 kb on - strand, within HP15_2556 at 2703.035 kb on + strand, within HP15_2556 at 2703.075 kb on - strand, within HP15_2556 at 2703.207 kb on + strand, within HP15_2556 at 2703.215 kb on - strand, within HP15_2556 at 2703.241 kb on + strand, within HP15_2556 at 2703.331 kb on - strand, within HP15_2556 at 2703.434 kb on - strand, within HP15_2556 at 2703.444 kb on - strand, within HP15_2556 at 2703.454 kb on - strand, within HP15_2556 at 2703.454 kb on - strand, within HP15_2556 at 2703.499 kb on + strand, within HP15_2556 at 2703.513 kb on - strand, within HP15_2556 at 2703.620 kb on - strand at 2703.630 kb on + strand at 2703.633 kb on - strand at 2703.638 kb on - strand at 2703.703 kb on - strand at 2703.732 kb on + strand at 2703.738 kb on + strand at 2703.760 kb on + strand at 2703.778 kb on + strand at 2703.804 kb on - strand at 2703.834 kb on + strand at 2703.847 kb on - strand at 2703.905 kb on + strand, within HP15_2557 at 2703.913 kb on + strand, within HP15_2557 at 2703.923 kb on - strand, within HP15_2557 at 2704.021 kb on + strand, within HP15_2557 at 2704.050 kb on - strand, within HP15_2557 at 2704.313 kb on + strand, within HP15_2557 at 2704.313 kb on + strand, within HP15_2557 at 2704.313 kb on + strand, within HP15_2557 at 2704.321 kb on - strand, within HP15_2557 at 2704.321 kb on - strand, within HP15_2557 at 2704.462 kb on + strand, within HP15_2557 at 2704.472 kb on + strand, within HP15_2557 at 2704.484 kb on - strand, within HP15_2557 at 2704.560 kb on + strand, within HP15_2557 at 2704.567 kb on + strand, within HP15_2557 at 2704.691 kb on - strand, within HP15_2558 at 2704.691 kb on - strand, within HP15_2558 at 2704.701 kb on + strand, within HP15_2558 at 2704.939 kb on - strand at 2705.024 kb on - strand, within HP15_2559 at 2705.029 kb on - strand, within HP15_2559 at 2705.034 kb on - strand, within HP15_2559 at 2705.086 kb on + strand, within HP15_2559 at 2705.162 kb on + strand, within HP15_2559 at 2705.306 kb on + strand, within HP15_2559 at 2705.323 kb on + strand, within HP15_2559 at 2705.351 kb on + strand, within HP15_2559 at 2705.390 kb on - strand, within HP15_2559 at 2705.430 kb on + strand, within HP15_2559 at 2705.493 kb on + strand, within HP15_2559 at 2705.512 kb on + strand, within HP15_2559 at 2705.587 kb on + strand, within HP15_2559 at 2705.668 kb on - strand, within HP15_2559
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic remove 2,702,862 - HP15_2556 0.18 -0.6 2,702,862 - HP15_2556 0.18 +1.2 2,702,871 - HP15_2556 0.19 -0.3 2,702,908 + HP15_2556 0.22 +1.2 2,702,921 - HP15_2556 0.24 -0.7 2,702,962 + HP15_2556 0.28 -0.9 2,703,018 + HP15_2556 0.33 +0.6 2,703,024 - HP15_2556 0.34 -0.8 2,703,035 + HP15_2556 0.35 -0.6 2,703,075 - HP15_2556 0.39 +2.0 2,703,207 + HP15_2556 0.52 +1.4 2,703,215 - HP15_2556 0.53 -1.0 2,703,241 + HP15_2556 0.55 +1.1 2,703,331 - HP15_2556 0.64 +0.5 2,703,434 - HP15_2556 0.75 +1.5 2,703,444 - HP15_2556 0.76 +1.8 2,703,454 - HP15_2556 0.77 -0.1 2,703,454 - HP15_2556 0.77 -0.3 2,703,499 + HP15_2556 0.81 -0.7 2,703,513 - HP15_2556 0.82 +0.4 2,703,620 - -0.7 2,703,630 + +1.2 2,703,633 - -1.1 2,703,638 - -0.5 2,703,703 - -1.1 2,703,732 + +2.3 2,703,738 + +1.2 2,703,760 + -0.5 2,703,778 + +1.3 2,703,804 - -0.3 2,703,834 + -0.2 2,703,847 - -2.1 2,703,905 + HP15_2557 0.14 +0.4 2,703,913 + HP15_2557 0.14 -0.3 2,703,923 - HP15_2557 0.16 +1.8 2,704,021 + HP15_2557 0.27 -1.5 2,704,050 - HP15_2557 0.30 +2.2 2,704,313 + HP15_2557 0.59 -1.3 2,704,313 + HP15_2557 0.59 -1.2 2,704,313 + HP15_2557 0.59 -0.4 2,704,321 - HP15_2557 0.60 -0.7 2,704,321 - HP15_2557 0.60 -0.1 2,704,462 + HP15_2557 0.76 -0.9 2,704,472 + HP15_2557 0.77 -0.1 2,704,484 - HP15_2557 0.78 -1.4 2,704,560 + HP15_2557 0.87 -0.4 2,704,567 + HP15_2557 0.88 +0.0 2,704,691 - HP15_2558 0.14 -0.2 2,704,691 - HP15_2558 0.14 +1.3 2,704,701 + HP15_2558 0.18 +0.2 2,704,939 - -0.2 2,705,024 - HP15_2559 0.11 +1.3 2,705,029 - HP15_2559 0.12 +1.0 2,705,034 - HP15_2559 0.12 +0.9 2,705,086 + HP15_2559 0.18 -0.1 2,705,162 + HP15_2559 0.26 +1.5 2,705,306 + HP15_2559 0.42 +2.0 2,705,323 + HP15_2559 0.44 +1.4 2,705,351 + HP15_2559 0.47 -0.2 2,705,390 - HP15_2559 0.52 -0.1 2,705,430 + HP15_2559 0.56 -0.2 2,705,493 + HP15_2559 0.63 -0.7 2,705,512 + HP15_2559 0.65 -0.2 2,705,587 + HP15_2559 0.73 -0.0 2,705,668 - HP15_2559 0.82 +1.6
Or see this region's nucleotide sequence