Strain Fitness in Marinobacter adhaerens HP15 around HP15_2330

Experiment: L-Glutamic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2329 and HP15_2330 are separated by 230 nucleotidesHP15_2330 and HP15_2331 are separated by 89 nucleotidesHP15_2331 and HP15_2332 are separated by 17 nucleotides HP15_2329: HP15_2329 - two-component sensor, at 2,448,699 to 2,449,937 _2329 HP15_2330: HP15_2330 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,450,168 to 2,451,601 _2330 HP15_2331: HP15_2331 - SOS cell division inhibitor, at 2,451,691 to 2,452,020 _2331 HP15_2332: HP15_2332 - secreted protein containing DUF1329, at 2,452,038 to 2,453,396 _2332 Position (kb) 2450 2451 2452Strain fitness (log2 ratio) -1 0 1 2 3at 2449.196 kb on + strand, within HP15_2329at 2449.282 kb on + strand, within HP15_2329at 2449.312 kb on - strand, within HP15_2329at 2449.314 kb on + strand, within HP15_2329at 2449.368 kb on - strand, within HP15_2329at 2449.371 kb on + strand, within HP15_2329at 2449.425 kb on - strand, within HP15_2329at 2449.466 kb on + strand, within HP15_2329at 2449.484 kb on + strand, within HP15_2329at 2449.492 kb on - strand, within HP15_2329at 2449.529 kb on + strand, within HP15_2329at 2449.543 kb on - strand, within HP15_2329at 2449.548 kb on - strand, within HP15_2329at 2449.560 kb on - strand, within HP15_2329at 2449.809 kb on - strand, within HP15_2329at 2449.882 kb on + strandat 2449.882 kb on + strandat 2449.962 kb on - strandat 2449.972 kb on - strandat 2450.166 kb on + strandat 2450.166 kb on + strandat 2450.176 kb on + strandat 2450.329 kb on + strand, within HP15_2330at 2450.359 kb on + strand, within HP15_2330at 2450.439 kb on - strand, within HP15_2330at 2450.439 kb on - strand, within HP15_2330at 2450.470 kb on + strand, within HP15_2330at 2450.598 kb on + strand, within HP15_2330at 2450.657 kb on - strand, within HP15_2330at 2450.850 kb on + strand, within HP15_2330at 2450.891 kb on + strand, within HP15_2330at 2450.926 kb on + strand, within HP15_2330at 2450.926 kb on + strand, within HP15_2330at 2450.926 kb on + strand, within HP15_2330at 2451.009 kb on + strand, within HP15_2330at 2451.064 kb on + strand, within HP15_2330at 2451.181 kb on + strand, within HP15_2330at 2451.207 kb on - strand, within HP15_2330at 2451.249 kb on + strand, within HP15_2330at 2451.252 kb on - strand, within HP15_2330at 2451.254 kb on + strand, within HP15_2330at 2451.254 kb on + strand, within HP15_2330at 2451.264 kb on + strand, within HP15_2330at 2451.272 kb on - strand, within HP15_2330at 2451.327 kb on + strand, within HP15_2330at 2451.354 kb on + strand, within HP15_2330at 2451.381 kb on + strand, within HP15_2330at 2451.388 kb on - strand, within HP15_2330at 2451.394 kb on - strand, within HP15_2330at 2451.396 kb on + strand, within HP15_2330at 2451.396 kb on + strand, within HP15_2330at 2451.404 kb on - strand, within HP15_2330at 2451.491 kb on + strandat 2451.652 kb on + strandat 2451.660 kb on - strandat 2451.660 kb on - strandat 2451.765 kb on - strand, within HP15_2331at 2451.765 kb on - strand, within HP15_2331at 2451.765 kb on - strand, within HP15_2331at 2451.822 kb on + strand, within HP15_2331at 2451.994 kb on + strandat 2452.001 kb on - strandat 2452.183 kb on + strand, within HP15_2332at 2452.222 kb on + strand, within HP15_2332at 2452.370 kb on - strand, within HP15_2332at 2452.493 kb on + strand, within HP15_2332at 2452.561 kb on - strand, within HP15_2332

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic
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2,449,196 + HP15_2329 0.40 +1.3
2,449,282 + HP15_2329 0.47 +1.7
2,449,312 - HP15_2329 0.49 +1.4
2,449,314 + HP15_2329 0.50 +1.3
2,449,368 - HP15_2329 0.54 +1.4
2,449,371 + HP15_2329 0.54 +1.4
2,449,425 - HP15_2329 0.59 +0.9
2,449,466 + HP15_2329 0.62 +0.9
2,449,484 + HP15_2329 0.63 +1.4
2,449,492 - HP15_2329 0.64 +1.4
2,449,529 + HP15_2329 0.67 +1.4
2,449,543 - HP15_2329 0.68 +0.9
2,449,548 - HP15_2329 0.69 +1.8
2,449,560 - HP15_2329 0.69 +2.0
2,449,809 - HP15_2329 0.90 +0.9
2,449,882 + +1.4
2,449,882 + +2.1
2,449,962 - +0.3
2,449,972 - +0.0
2,450,166 + -0.3
2,450,166 + +1.2
2,450,176 + +0.0
2,450,329 + HP15_2330 0.11 +1.7
2,450,359 + HP15_2330 0.13 +1.6
2,450,439 - HP15_2330 0.19 +1.1
2,450,439 - HP15_2330 0.19 +1.1
2,450,470 + HP15_2330 0.21 +1.8
2,450,598 + HP15_2330 0.30 +2.0
2,450,657 - HP15_2330 0.34 +3.1
2,450,850 + HP15_2330 0.48 +1.7
2,450,891 + HP15_2330 0.50 +1.6
2,450,926 + HP15_2330 0.53 +1.9
2,450,926 + HP15_2330 0.53 +1.6
2,450,926 + HP15_2330 0.53 +2.0
2,451,009 + HP15_2330 0.59 +2.4
2,451,064 + HP15_2330 0.62 +1.2
2,451,181 + HP15_2330 0.71 +1.8
2,451,207 - HP15_2330 0.72 +2.1
2,451,249 + HP15_2330 0.75 +2.0
2,451,252 - HP15_2330 0.76 +1.4
2,451,254 + HP15_2330 0.76 +1.7
2,451,254 + HP15_2330 0.76 +1.3
2,451,264 + HP15_2330 0.76 +1.7
2,451,272 - HP15_2330 0.77 +1.6
2,451,327 + HP15_2330 0.81 +0.9
2,451,354 + HP15_2330 0.83 +1.8
2,451,381 + HP15_2330 0.85 +1.7
2,451,388 - HP15_2330 0.85 +1.6
2,451,394 - HP15_2330 0.85 +2.1
2,451,396 + HP15_2330 0.86 +1.1
2,451,396 + HP15_2330 0.86 +1.5
2,451,404 - HP15_2330 0.86 +1.5
2,451,491 + +1.0
2,451,652 + +1.7
2,451,660 - +1.0
2,451,660 - +1.4
2,451,765 - HP15_2331 0.22 +1.8
2,451,765 - HP15_2331 0.22 +0.9
2,451,765 - HP15_2331 0.22 +1.2
2,451,822 + HP15_2331 0.40 +0.9
2,451,994 + +0.9
2,452,001 - +1.5
2,452,183 + HP15_2332 0.11 -0.6
2,452,222 + HP15_2332 0.14 -0.2
2,452,370 - HP15_2332 0.24 +0.1
2,452,493 + HP15_2332 0.33 -0.1
2,452,561 - HP15_2332 0.38 +1.2

Or see this region's nucleotide sequence