Experiment: L-Glutamic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2329 and HP15_2330 are separated by 230 nucleotides HP15_2330 and HP15_2331 are separated by 89 nucleotides HP15_2331 and HP15_2332 are separated by 17 nucleotides
HP15_2329: HP15_2329 - two-component sensor, at 2,448,699 to 2,449,937
_2329
HP15_2330: HP15_2330 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,450,168 to 2,451,601
_2330
HP15_2331: HP15_2331 - SOS cell division inhibitor, at 2,451,691 to 2,452,020
_2331
HP15_2332: HP15_2332 - secreted protein containing DUF1329, at 2,452,038 to 2,453,396
_2332
Position (kb)
2450
2451
2452 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2449.196 kb on + strand, within HP15_2329 at 2449.282 kb on + strand, within HP15_2329 at 2449.312 kb on - strand, within HP15_2329 at 2449.314 kb on + strand, within HP15_2329 at 2449.368 kb on - strand, within HP15_2329 at 2449.371 kb on + strand, within HP15_2329 at 2449.425 kb on - strand, within HP15_2329 at 2449.466 kb on + strand, within HP15_2329 at 2449.484 kb on + strand, within HP15_2329 at 2449.492 kb on - strand, within HP15_2329 at 2449.529 kb on + strand, within HP15_2329 at 2449.543 kb on - strand, within HP15_2329 at 2449.548 kb on - strand, within HP15_2329 at 2449.560 kb on - strand, within HP15_2329 at 2449.809 kb on - strand, within HP15_2329 at 2449.882 kb on + strand at 2449.882 kb on + strand at 2449.962 kb on - strand at 2449.972 kb on - strand at 2450.166 kb on + strand at 2450.166 kb on + strand at 2450.176 kb on + strand at 2450.329 kb on + strand, within HP15_2330 at 2450.359 kb on + strand, within HP15_2330 at 2450.439 kb on - strand, within HP15_2330 at 2450.439 kb on - strand, within HP15_2330 at 2450.470 kb on + strand, within HP15_2330 at 2450.598 kb on + strand, within HP15_2330 at 2450.657 kb on - strand, within HP15_2330 at 2450.850 kb on + strand, within HP15_2330 at 2450.891 kb on + strand, within HP15_2330 at 2450.926 kb on + strand, within HP15_2330 at 2450.926 kb on + strand, within HP15_2330 at 2450.926 kb on + strand, within HP15_2330 at 2451.009 kb on + strand, within HP15_2330 at 2451.064 kb on + strand, within HP15_2330 at 2451.181 kb on + strand, within HP15_2330 at 2451.207 kb on - strand, within HP15_2330 at 2451.249 kb on + strand, within HP15_2330 at 2451.252 kb on - strand, within HP15_2330 at 2451.254 kb on + strand, within HP15_2330 at 2451.254 kb on + strand, within HP15_2330 at 2451.264 kb on + strand, within HP15_2330 at 2451.272 kb on - strand, within HP15_2330 at 2451.327 kb on + strand, within HP15_2330 at 2451.354 kb on + strand, within HP15_2330 at 2451.381 kb on + strand, within HP15_2330 at 2451.388 kb on - strand, within HP15_2330 at 2451.394 kb on - strand, within HP15_2330 at 2451.396 kb on + strand, within HP15_2330 at 2451.396 kb on + strand, within HP15_2330 at 2451.404 kb on - strand, within HP15_2330 at 2451.491 kb on + strand at 2451.652 kb on + strand at 2451.660 kb on - strand at 2451.660 kb on - strand at 2451.765 kb on - strand, within HP15_2331 at 2451.765 kb on - strand, within HP15_2331 at 2451.765 kb on - strand, within HP15_2331 at 2451.822 kb on + strand, within HP15_2331 at 2451.994 kb on + strand at 2452.001 kb on - strand at 2452.183 kb on + strand, within HP15_2332 at 2452.222 kb on + strand, within HP15_2332 at 2452.370 kb on - strand, within HP15_2332 at 2452.493 kb on + strand, within HP15_2332 at 2452.561 kb on - strand, within HP15_2332
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic remove 2,449,196 + HP15_2329 0.40 +1.3 2,449,282 + HP15_2329 0.47 +1.7 2,449,312 - HP15_2329 0.49 +1.4 2,449,314 + HP15_2329 0.50 +1.3 2,449,368 - HP15_2329 0.54 +1.4 2,449,371 + HP15_2329 0.54 +1.4 2,449,425 - HP15_2329 0.59 +0.9 2,449,466 + HP15_2329 0.62 +0.9 2,449,484 + HP15_2329 0.63 +1.4 2,449,492 - HP15_2329 0.64 +1.4 2,449,529 + HP15_2329 0.67 +1.4 2,449,543 - HP15_2329 0.68 +0.9 2,449,548 - HP15_2329 0.69 +1.8 2,449,560 - HP15_2329 0.69 +2.0 2,449,809 - HP15_2329 0.90 +0.9 2,449,882 + +1.4 2,449,882 + +2.1 2,449,962 - +0.3 2,449,972 - +0.0 2,450,166 + -0.3 2,450,166 + +1.2 2,450,176 + +0.0 2,450,329 + HP15_2330 0.11 +1.7 2,450,359 + HP15_2330 0.13 +1.6 2,450,439 - HP15_2330 0.19 +1.1 2,450,439 - HP15_2330 0.19 +1.1 2,450,470 + HP15_2330 0.21 +1.8 2,450,598 + HP15_2330 0.30 +2.0 2,450,657 - HP15_2330 0.34 +3.1 2,450,850 + HP15_2330 0.48 +1.7 2,450,891 + HP15_2330 0.50 +1.6 2,450,926 + HP15_2330 0.53 +1.9 2,450,926 + HP15_2330 0.53 +1.6 2,450,926 + HP15_2330 0.53 +2.0 2,451,009 + HP15_2330 0.59 +2.4 2,451,064 + HP15_2330 0.62 +1.2 2,451,181 + HP15_2330 0.71 +1.8 2,451,207 - HP15_2330 0.72 +2.1 2,451,249 + HP15_2330 0.75 +2.0 2,451,252 - HP15_2330 0.76 +1.4 2,451,254 + HP15_2330 0.76 +1.7 2,451,254 + HP15_2330 0.76 +1.3 2,451,264 + HP15_2330 0.76 +1.7 2,451,272 - HP15_2330 0.77 +1.6 2,451,327 + HP15_2330 0.81 +0.9 2,451,354 + HP15_2330 0.83 +1.8 2,451,381 + HP15_2330 0.85 +1.7 2,451,388 - HP15_2330 0.85 +1.6 2,451,394 - HP15_2330 0.85 +2.1 2,451,396 + HP15_2330 0.86 +1.1 2,451,396 + HP15_2330 0.86 +1.5 2,451,404 - HP15_2330 0.86 +1.5 2,451,491 + +1.0 2,451,652 + +1.7 2,451,660 - +1.0 2,451,660 - +1.4 2,451,765 - HP15_2331 0.22 +1.8 2,451,765 - HP15_2331 0.22 +0.9 2,451,765 - HP15_2331 0.22 +1.2 2,451,822 + HP15_2331 0.40 +0.9 2,451,994 + +0.9 2,452,001 - +1.5 2,452,183 + HP15_2332 0.11 -0.6 2,452,222 + HP15_2332 0.14 -0.2 2,452,370 - HP15_2332 0.24 +0.1 2,452,493 + HP15_2332 0.33 -0.1 2,452,561 - HP15_2332 0.38 +1.2
Or see this region's nucleotide sequence