Experiment: L-Glutamic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2300 and HP15_2301 are separated by 11 nucleotides HP15_2301 and HP15_2302 are separated by 162 nucleotides HP15_2302 and HP15_2303 are separated by 31 nucleotides HP15_2303 and HP15_2304 are separated by 92 nucleotides
HP15_2300: HP15_2300 - chemotaxis phosphatase, CheZ, at 2,421,884 to 2,422,441
_2300
HP15_2301: HP15_2301 - response regulator receiver domain protein (CheY-), at 2,422,453 to 2,422,836
_2301
HP15_2302: HP15_2302 - flagellar biosynthesis sigma factor FliA, at 2,422,999 to 2,423,742
_2302
HP15_2303: HP15_2303 - flagellar synthesis regulator FleN, at 2,423,774 to 2,424,562
_2303
HP15_2304: HP15_2304 - flagellar biosynthesis regulator FlhF, at 2,424,655 to 2,425,962
_2304
Position (kb)
2422
2423
2424 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2422.041 kb on - strand, within HP15_2300 at 2422.102 kb on + strand, within HP15_2300 at 2422.110 kb on - strand, within HP15_2300 at 2422.143 kb on + strand, within HP15_2300 at 2422.312 kb on + strand, within HP15_2300 at 2422.315 kb on - strand, within HP15_2300 at 2422.357 kb on + strand, within HP15_2300 at 2422.396 kb on + strand at 2422.404 kb on - strand at 2422.545 kb on - strand, within HP15_2301 at 2422.565 kb on + strand, within HP15_2301 at 2422.565 kb on + strand, within HP15_2301 at 2422.628 kb on + strand, within HP15_2301 at 2422.628 kb on + strand, within HP15_2301 at 2422.628 kb on + strand, within HP15_2301 at 2422.636 kb on - strand, within HP15_2301 at 2422.636 kb on - strand, within HP15_2301 at 2422.636 kb on - strand, within HP15_2301 at 2422.987 kb on + strand at 2423.070 kb on + strand at 2423.070 kb on + strand at 2423.070 kb on + strand at 2423.078 kb on - strand, within HP15_2302 at 2423.078 kb on - strand, within HP15_2302 at 2423.078 kb on - strand, within HP15_2302 at 2423.093 kb on - strand, within HP15_2302 at 2423.119 kb on - strand, within HP15_2302 at 2423.231 kb on + strand, within HP15_2302 at 2423.346 kb on + strand, within HP15_2302 at 2423.346 kb on + strand, within HP15_2302 at 2423.346 kb on + strand, within HP15_2302 at 2423.354 kb on - strand, within HP15_2302 at 2423.370 kb on + strand, within HP15_2302 at 2423.448 kb on + strand, within HP15_2302 at 2423.463 kb on - strand, within HP15_2302 at 2423.557 kb on - strand, within HP15_2302 at 2423.564 kb on + strand, within HP15_2302 at 2424.042 kb on + strand, within HP15_2303 at 2424.109 kb on + strand, within HP15_2303 at 2424.117 kb on - strand, within HP15_2303 at 2424.290 kb on + strand, within HP15_2303 at 2424.493 kb on + strand at 2424.625 kb on - strand at 2424.640 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic remove 2,422,041 - HP15_2300 0.28 +0.2 2,422,102 + HP15_2300 0.39 +2.2 2,422,110 - HP15_2300 0.41 +0.2 2,422,143 + HP15_2300 0.46 +1.0 2,422,312 + HP15_2300 0.77 -0.2 2,422,315 - HP15_2300 0.77 +1.6 2,422,357 + HP15_2300 0.85 +1.0 2,422,396 + +1.6 2,422,404 - +0.3 2,422,545 - HP15_2301 0.24 +0.6 2,422,565 + HP15_2301 0.29 +1.4 2,422,565 + HP15_2301 0.29 +0.8 2,422,628 + HP15_2301 0.46 +1.0 2,422,628 + HP15_2301 0.46 +1.4 2,422,628 + HP15_2301 0.46 -0.1 2,422,636 - HP15_2301 0.48 +1.6 2,422,636 - HP15_2301 0.48 -0.1 2,422,636 - HP15_2301 0.48 -1.2 2,422,987 + -0.4 2,423,070 + +1.8 2,423,070 + +1.6 2,423,070 + +1.8 2,423,078 - HP15_2302 0.11 +1.7 2,423,078 - HP15_2302 0.11 +2.1 2,423,078 - HP15_2302 0.11 +1.5 2,423,093 - HP15_2302 0.13 +2.2 2,423,119 - HP15_2302 0.16 +1.5 2,423,231 + HP15_2302 0.31 +1.7 2,423,346 + HP15_2302 0.47 +1.8 2,423,346 + HP15_2302 0.47 +1.6 2,423,346 + HP15_2302 0.47 +1.4 2,423,354 - HP15_2302 0.48 +1.7 2,423,370 + HP15_2302 0.50 +2.1 2,423,448 + HP15_2302 0.60 +1.8 2,423,463 - HP15_2302 0.62 +0.7 2,423,557 - HP15_2302 0.75 +2.2 2,423,564 + HP15_2302 0.76 +1.9 2,424,042 + HP15_2303 0.34 -1.4 2,424,109 + HP15_2303 0.42 -0.2 2,424,117 - HP15_2303 0.43 -2.2 2,424,290 + HP15_2303 0.65 -0.9 2,424,493 + +1.2 2,424,625 - +1.2 2,424,640 - -0.6
Or see this region's nucleotide sequence