Experiment: L-Glutamic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2080 and HP15_2081 are separated by 18 nucleotides HP15_2081 and HP15_2082 are separated by 429 nucleotides HP15_2082 and HP15_2083 are separated by 66 nucleotides
HP15_2080: HP15_2080 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 2,179,224 to 2,181,494
_2080
HP15_2081: HP15_2081 - ATP-dependent Clp protease adaptor protein ClpS, at 2,181,513 to 2,181,749
_2081
HP15_2082: HP15_2082 - cold-shock DNA-binding domain protein, at 2,182,179 to 2,182,490
_2082
HP15_2083: HP15_2083 - hypothetical protein, at 2,182,557 to 2,182,724
_2083
Position (kb)
2181
2182 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2180.645 kb on - strand, within HP15_2080 at 2180.883 kb on + strand, within HP15_2080 at 2180.949 kb on - strand, within HP15_2080 at 2180.968 kb on - strand, within HP15_2080 at 2181.054 kb on + strand, within HP15_2080 at 2181.090 kb on + strand, within HP15_2080 at 2181.218 kb on + strand, within HP15_2080 at 2181.226 kb on - strand, within HP15_2080 at 2181.226 kb on - strand, within HP15_2080 at 2181.245 kb on + strand, within HP15_2080 at 2181.418 kb on + strand at 2181.465 kb on - strand at 2181.509 kb on - strand at 2181.516 kb on + strand at 2181.540 kb on - strand, within HP15_2081 at 2181.559 kb on + strand, within HP15_2081 at 2181.562 kb on + strand, within HP15_2081 at 2181.614 kb on - strand, within HP15_2081 at 2181.614 kb on - strand, within HP15_2081 at 2181.643 kb on - strand, within HP15_2081 at 2181.643 kb on - strand, within HP15_2081 at 2181.748 kb on + strand at 2181.801 kb on - strand at 2182.316 kb on + strand, within HP15_2082 at 2182.316 kb on + strand, within HP15_2082 at 2182.316 kb on + strand, within HP15_2082 at 2182.324 kb on - strand, within HP15_2082 at 2182.370 kb on - strand, within HP15_2082 at 2182.479 kb on + strand at 2182.487 kb on - strand at 2182.497 kb on - strand at 2182.589 kb on - strand, within HP15_2083 at 2182.631 kb on + strand, within HP15_2083 at 2182.631 kb on + strand, within HP15_2083 at 2182.639 kb on - strand, within HP15_2083 at 2182.641 kb on + strand, within HP15_2083 at 2182.649 kb on - strand, within HP15_2083 at 2182.650 kb on - strand, within HP15_2083 at 2182.663 kb on + strand, within HP15_2083 at 2182.681 kb on - strand, within HP15_2083
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic remove 2,180,645 - HP15_2080 0.63 -1.0 2,180,883 + HP15_2080 0.73 +0.7 2,180,949 - HP15_2080 0.76 -0.5 2,180,968 - HP15_2080 0.77 +2.8 2,181,054 + HP15_2080 0.81 +0.5 2,181,090 + HP15_2080 0.82 +0.6 2,181,218 + HP15_2080 0.88 +2.1 2,181,226 - HP15_2080 0.88 +0.1 2,181,226 - HP15_2080 0.88 -0.5 2,181,245 + HP15_2080 0.89 +1.5 2,181,418 + +1.5 2,181,465 - +0.8 2,181,509 - +1.6 2,181,516 + +2.1 2,181,540 - HP15_2081 0.11 +0.6 2,181,559 + HP15_2081 0.19 +0.7 2,181,562 + HP15_2081 0.21 +1.0 2,181,614 - HP15_2081 0.43 +1.8 2,181,614 - HP15_2081 0.43 +2.1 2,181,643 - HP15_2081 0.55 +1.4 2,181,643 - HP15_2081 0.55 +0.5 2,181,748 + +0.5 2,181,801 - +1.5 2,182,316 + HP15_2082 0.44 -0.6 2,182,316 + HP15_2082 0.44 +0.5 2,182,316 + HP15_2082 0.44 +0.1 2,182,324 - HP15_2082 0.46 +0.1 2,182,370 - HP15_2082 0.61 -0.5 2,182,479 + -0.5 2,182,487 - +0.1 2,182,497 - -0.3 2,182,589 - HP15_2083 0.19 -0.1 2,182,631 + HP15_2083 0.44 -0.1 2,182,631 + HP15_2083 0.44 +1.2 2,182,639 - HP15_2083 0.49 -0.3 2,182,641 + HP15_2083 0.50 -0.3 2,182,649 - HP15_2083 0.55 +2.7 2,182,650 - HP15_2083 0.55 +1.9 2,182,663 + HP15_2083 0.63 -0.0 2,182,681 - HP15_2083 0.74 +1.6
Or see this region's nucleotide sequence