Experiment: L-Glutamic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1657 and HP15_1658 are separated by 30 nucleotides HP15_1658 and HP15_1659 are separated by 342 nucleotides HP15_1659 and HP15_1660 are separated by 16 nucleotides HP15_1660 and HP15_1661 are separated by 195 nucleotides
HP15_1657: HP15_1657 - dihydrolipoamide dehydrogenase, at 1,751,744 to 1,753,165
_1657
HP15_1658: HP15_1658 - glutaredoxin-like protein, at 1,753,196 to 1,753,408
_1658
HP15_1659: HP15_1659 - hypothetical protein, at 1,753,751 to 1,753,873
_1659
HP15_1660: HP15_1660 - hypothetical protein, at 1,753,890 to 1,754,024
_1660
HP15_1661: HP15_1661 - hydrolase-like protein, at 1,754,220 to 1,754,540
_1661
Position (kb)
1753
1754 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1752.266 kb on + strand, within HP15_1657 at 1752.274 kb on - strand, within HP15_1657 at 1752.376 kb on + strand, within HP15_1657 at 1752.430 kb on + strand, within HP15_1657 at 1752.651 kb on - strand, within HP15_1657 at 1752.807 kb on + strand, within HP15_1657 at 1752.840 kb on - strand, within HP15_1657 at 1752.897 kb on + strand, within HP15_1657 at 1752.954 kb on - strand, within HP15_1657 at 1753.042 kb on - strand at 1753.044 kb on - strand at 1753.059 kb on + strand at 1753.079 kb on + strand at 1753.152 kb on - strand at 1753.211 kb on - strand at 1753.353 kb on - strand, within HP15_1658 at 1753.462 kb on + strand at 1753.536 kb on + strand at 1753.749 kb on + strand at 1753.858 kb on + strand, within HP15_1659 at 1753.858 kb on + strand, within HP15_1659 at 1753.984 kb on - strand, within HP15_1660 at 1753.994 kb on - strand, within HP15_1660 at 1754.289 kb on + strand, within HP15_1661
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic remove 1,752,266 + HP15_1657 0.37 -2.0 1,752,274 - HP15_1657 0.37 +0.5 1,752,376 + HP15_1657 0.44 -0.1 1,752,430 + HP15_1657 0.48 -0.3 1,752,651 - HP15_1657 0.64 +1.7 1,752,807 + HP15_1657 0.75 +1.5 1,752,840 - HP15_1657 0.77 +1.3 1,752,897 + HP15_1657 0.81 -1.5 1,752,954 - HP15_1657 0.85 +1.8 1,753,042 - -1.4 1,753,044 - -0.6 1,753,059 + +0.1 1,753,079 + +0.8 1,753,152 - -0.8 1,753,211 - +1.8 1,753,353 - HP15_1658 0.74 +1.4 1,753,462 + +0.7 1,753,536 + +1.4 1,753,749 + +0.1 1,753,858 + HP15_1659 0.87 +1.4 1,753,858 + HP15_1659 0.87 +1.4 1,753,984 - HP15_1660 0.70 -0.4 1,753,994 - HP15_1660 0.77 +0.5 1,754,289 + HP15_1661 0.21 -0.6
Or see this region's nucleotide sequence