Experiment: L-Glutamic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1610 and HP15_1611 are separated by 56 nucleotides HP15_1611 and HP15_1612 are separated by 26 nucleotides HP15_1612 and HP15_1613 are separated by 38 nucleotides
HP15_1610: HP15_1610 - general secretion pathway protein M, at 1,706,125 to 1,706,655
_1610
HP15_1611: HP15_1611 - GCN5-related N-acetyltransferase, at 1,706,712 to 1,707,383
_1611
HP15_1612: HP15_1612 - protein containing FAD-dependent pyridine nucleotide-disulfide oxidoreductase / Pyridine nucleotide-disulfide oxidoreductase, dimerization, at 1,707,410 to 1,708,771
_1612
HP15_1613: HP15_1613 - sensory box histidine kinase/response regulator, at 1,708,810 to 1,710,753
_1613
Position (kb)
1707
1708
1709 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1706.531 kb on + strand, within HP15_1610 at 1706.596 kb on + strand, within HP15_1610 at 1706.604 kb on - strand at 1706.799 kb on - strand, within HP15_1611 at 1707.033 kb on + strand, within HP15_1611 at 1707.053 kb on - strand, within HP15_1611 at 1707.053 kb on - strand, within HP15_1611 at 1707.486 kb on - strand at 1707.515 kb on + strand at 1707.651 kb on + strand, within HP15_1612 at 1707.944 kb on + strand, within HP15_1612 at 1707.952 kb on - strand, within HP15_1612 at 1707.981 kb on + strand, within HP15_1612 at 1708.148 kb on + strand, within HP15_1612 at 1708.173 kb on + strand, within HP15_1612 at 1708.229 kb on - strand, within HP15_1612 at 1708.229 kb on - strand, within HP15_1612 at 1708.285 kb on + strand, within HP15_1612 at 1708.321 kb on - strand, within HP15_1612 at 1708.356 kb on + strand, within HP15_1612 at 1708.366 kb on + strand, within HP15_1612 at 1708.381 kb on - strand, within HP15_1612 at 1708.521 kb on - strand, within HP15_1612 at 1708.707 kb on - strand at 1708.815 kb on + strand at 1708.862 kb on + strand at 1708.870 kb on - strand at 1709.006 kb on - strand, within HP15_1613 at 1709.051 kb on - strand, within HP15_1613 at 1709.069 kb on + strand, within HP15_1613 at 1709.074 kb on + strand, within HP15_1613 at 1709.293 kb on - strand, within HP15_1613 at 1709.293 kb on - strand, within HP15_1613 at 1709.293 kb on - strand, within HP15_1613 at 1709.303 kb on - strand, within HP15_1613 at 1709.327 kb on + strand, within HP15_1613 at 1709.355 kb on + strand, within HP15_1613 at 1709.411 kb on - strand, within HP15_1613 at 1709.615 kb on - strand, within HP15_1613 at 1709.664 kb on - strand, within HP15_1613 at 1709.716 kb on + strand, within HP15_1613 at 1709.760 kb on - strand, within HP15_1613
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic remove 1,706,531 + HP15_1610 0.76 +0.7 1,706,596 + HP15_1610 0.89 +0.4 1,706,604 - +2.5 1,706,799 - HP15_1611 0.13 -0.8 1,707,033 + HP15_1611 0.48 +1.7 1,707,053 - HP15_1611 0.51 +0.1 1,707,053 - HP15_1611 0.51 -0.4 1,707,486 - -0.6 1,707,515 + -0.4 1,707,651 + HP15_1612 0.18 +1.5 1,707,944 + HP15_1612 0.39 -2.2 1,707,952 - HP15_1612 0.40 -0.2 1,707,981 + HP15_1612 0.42 -0.2 1,708,148 + HP15_1612 0.54 +1.9 1,708,173 + HP15_1612 0.56 -0.2 1,708,229 - HP15_1612 0.60 -0.9 1,708,229 - HP15_1612 0.60 -2.8 1,708,285 + HP15_1612 0.64 -1.0 1,708,321 - HP15_1612 0.67 -0.6 1,708,356 + HP15_1612 0.69 -0.8 1,708,366 + HP15_1612 0.70 -0.5 1,708,381 - HP15_1612 0.71 -1.6 1,708,521 - HP15_1612 0.82 +1.4 1,708,707 - +1.8 1,708,815 + -1.6 1,708,862 + -0.8 1,708,870 - -0.3 1,709,006 - HP15_1613 0.10 -1.8 1,709,051 - HP15_1613 0.12 -0.5 1,709,069 + HP15_1613 0.13 -0.5 1,709,074 + HP15_1613 0.14 -0.9 1,709,293 - HP15_1613 0.25 +1.5 1,709,293 - HP15_1613 0.25 +3.0 1,709,293 - HP15_1613 0.25 -1.4 1,709,303 - HP15_1613 0.25 +0.1 1,709,327 + HP15_1613 0.27 +1.3 1,709,355 + HP15_1613 0.28 +0.7 1,709,411 - HP15_1613 0.31 -2.4 1,709,615 - HP15_1613 0.41 +1.5 1,709,664 - HP15_1613 0.44 +1.5 1,709,716 + HP15_1613 0.47 -0.1 1,709,760 - HP15_1613 0.49 -0.6
Or see this region's nucleotide sequence