Strain Fitness in Marinobacter adhaerens HP15 around HP15_1612

Experiment: L-Glutamic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1610 and HP15_1611 are separated by 56 nucleotidesHP15_1611 and HP15_1612 are separated by 26 nucleotidesHP15_1612 and HP15_1613 are separated by 38 nucleotides HP15_1610: HP15_1610 - general secretion pathway protein M, at 1,706,125 to 1,706,655 _1610 HP15_1611: HP15_1611 - GCN5-related N-acetyltransferase, at 1,706,712 to 1,707,383 _1611 HP15_1612: HP15_1612 - protein containing FAD-dependent pyridine nucleotide-disulfide oxidoreductase / Pyridine nucleotide-disulfide oxidoreductase, dimerization, at 1,707,410 to 1,708,771 _1612 HP15_1613: HP15_1613 - sensory box histidine kinase/response regulator, at 1,708,810 to 1,710,753 _1613 Position (kb) 1707 1708 1709Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1706.531 kb on + strand, within HP15_1610at 1706.596 kb on + strand, within HP15_1610at 1706.604 kb on - strandat 1706.799 kb on - strand, within HP15_1611at 1707.033 kb on + strand, within HP15_1611at 1707.053 kb on - strand, within HP15_1611at 1707.053 kb on - strand, within HP15_1611at 1707.486 kb on - strandat 1707.515 kb on + strandat 1707.651 kb on + strand, within HP15_1612at 1707.944 kb on + strand, within HP15_1612at 1707.952 kb on - strand, within HP15_1612at 1707.981 kb on + strand, within HP15_1612at 1708.148 kb on + strand, within HP15_1612at 1708.173 kb on + strand, within HP15_1612at 1708.229 kb on - strand, within HP15_1612at 1708.229 kb on - strand, within HP15_1612at 1708.285 kb on + strand, within HP15_1612at 1708.321 kb on - strand, within HP15_1612at 1708.356 kb on + strand, within HP15_1612at 1708.366 kb on + strand, within HP15_1612at 1708.381 kb on - strand, within HP15_1612at 1708.521 kb on - strand, within HP15_1612at 1708.707 kb on - strandat 1708.815 kb on + strandat 1708.862 kb on + strandat 1708.870 kb on - strandat 1709.006 kb on - strand, within HP15_1613at 1709.051 kb on - strand, within HP15_1613at 1709.069 kb on + strand, within HP15_1613at 1709.074 kb on + strand, within HP15_1613at 1709.293 kb on - strand, within HP15_1613at 1709.293 kb on - strand, within HP15_1613at 1709.293 kb on - strand, within HP15_1613at 1709.303 kb on - strand, within HP15_1613at 1709.327 kb on + strand, within HP15_1613at 1709.355 kb on + strand, within HP15_1613at 1709.411 kb on - strand, within HP15_1613at 1709.615 kb on - strand, within HP15_1613at 1709.664 kb on - strand, within HP15_1613at 1709.716 kb on + strand, within HP15_1613at 1709.760 kb on - strand, within HP15_1613

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic
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1,706,531 + HP15_1610 0.76 +0.7
1,706,596 + HP15_1610 0.89 +0.4
1,706,604 - +2.5
1,706,799 - HP15_1611 0.13 -0.8
1,707,033 + HP15_1611 0.48 +1.7
1,707,053 - HP15_1611 0.51 +0.1
1,707,053 - HP15_1611 0.51 -0.4
1,707,486 - -0.6
1,707,515 + -0.4
1,707,651 + HP15_1612 0.18 +1.5
1,707,944 + HP15_1612 0.39 -2.2
1,707,952 - HP15_1612 0.40 -0.2
1,707,981 + HP15_1612 0.42 -0.2
1,708,148 + HP15_1612 0.54 +1.9
1,708,173 + HP15_1612 0.56 -0.2
1,708,229 - HP15_1612 0.60 -0.9
1,708,229 - HP15_1612 0.60 -2.8
1,708,285 + HP15_1612 0.64 -1.0
1,708,321 - HP15_1612 0.67 -0.6
1,708,356 + HP15_1612 0.69 -0.8
1,708,366 + HP15_1612 0.70 -0.5
1,708,381 - HP15_1612 0.71 -1.6
1,708,521 - HP15_1612 0.82 +1.4
1,708,707 - +1.8
1,708,815 + -1.6
1,708,862 + -0.8
1,708,870 - -0.3
1,709,006 - HP15_1613 0.10 -1.8
1,709,051 - HP15_1613 0.12 -0.5
1,709,069 + HP15_1613 0.13 -0.5
1,709,074 + HP15_1613 0.14 -0.9
1,709,293 - HP15_1613 0.25 +1.5
1,709,293 - HP15_1613 0.25 +3.0
1,709,293 - HP15_1613 0.25 -1.4
1,709,303 - HP15_1613 0.25 +0.1
1,709,327 + HP15_1613 0.27 +1.3
1,709,355 + HP15_1613 0.28 +0.7
1,709,411 - HP15_1613 0.31 -2.4
1,709,615 - HP15_1613 0.41 +1.5
1,709,664 - HP15_1613 0.44 +1.5
1,709,716 + HP15_1613 0.47 -0.1
1,709,760 - HP15_1613 0.49 -0.6

Or see this region's nucleotide sequence