Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1454

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1453 and Psest_1454 are separated by 72 nucleotidesPsest_1454 and Psest_1455 are separated by 126 nucleotides Psest_1453: Psest_1453 - Glycerol-3-phosphate dehydrogenase, at 1,562,560 to 1,564,104 _1453 Psest_1454: Psest_1454 - ybaK/ebsC protein, at 1,564,177 to 1,564,647 _1454 Psest_1455: Psest_1455 - diguanylate cyclase (GGDEF) domain, at 1,564,774 to 1,565,862 _1455 Position (kb) 1564 1565Strain fitness (log2 ratio) -2 -1 0 1 2at 1563.209 kb on + strand, within Psest_1453at 1563.258 kb on - strand, within Psest_1453at 1563.258 kb on - strand, within Psest_1453at 1563.345 kb on - strand, within Psest_1453at 1563.345 kb on - strand, within Psest_1453at 1563.345 kb on - strand, within Psest_1453at 1563.345 kb on - strand, within Psest_1453at 1563.362 kb on + strand, within Psest_1453at 1563.362 kb on + strand, within Psest_1453at 1563.363 kb on - strand, within Psest_1453at 1563.363 kb on - strand, within Psest_1453at 1563.620 kb on - strand, within Psest_1453at 1563.620 kb on - strand, within Psest_1453at 1563.620 kb on - strand, within Psest_1453at 1563.657 kb on - strand, within Psest_1453at 1563.756 kb on - strand, within Psest_1453at 1563.793 kb on + strand, within Psest_1453at 1563.793 kb on + strand, within Psest_1453at 1563.793 kb on + strand, within Psest_1453at 1563.794 kb on - strand, within Psest_1453at 1563.794 kb on - strand, within Psest_1453at 1563.914 kb on + strand, within Psest_1453at 1563.939 kb on + strand, within Psest_1453at 1563.940 kb on - strand, within Psest_1453at 1563.940 kb on - strand, within Psest_1453at 1564.067 kb on + strandat 1564.067 kb on + strandat 1564.112 kb on + strandat 1564.113 kb on - strandat 1564.115 kb on - strandat 1564.115 kb on - strandat 1564.115 kb on - strandat 1564.115 kb on - strandat 1564.115 kb on - strandat 1564.115 kb on - strandat 1564.115 kb on - strandat 1564.115 kb on - strandat 1564.115 kb on - strandat 1564.119 kb on - strandat 1564.119 kb on - strandat 1564.163 kb on - strandat 1564.168 kb on + strandat 1564.234 kb on + strand, within Psest_1454at 1564.235 kb on - strand, within Psest_1454at 1564.235 kb on - strand, within Psest_1454at 1564.235 kb on - strand, within Psest_1454at 1564.262 kb on - strand, within Psest_1454at 1564.262 kb on - strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.550 kb on - strand, within Psest_1454at 1564.550 kb on - strand, within Psest_1454at 1564.550 kb on - strand, within Psest_1454at 1564.550 kb on - strand, within Psest_1454at 1564.550 kb on - strand, within Psest_1454at 1564.550 kb on - strand, within Psest_1454at 1564.550 kb on - strand, within Psest_1454at 1564.550 kb on - strand, within Psest_1454at 1564.550 kb on - strand, within Psest_1454at 1564.612 kb on - strandat 1564.612 kb on - strandat 1564.612 kb on - strandat 1564.646 kb on - strandat 1564.735 kb on + strandat 1565.184 kb on - strand, within Psest_1455at 1565.206 kb on + strand, within Psest_1455at 1565.208 kb on + strand, within Psest_1455at 1565.209 kb on - strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.249 kb on + strand, within Psest_1455at 1565.281 kb on + strand, within Psest_1455at 1565.337 kb on + strand, within Psest_1455

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,563,209 + Psest_1453 0.42 +1.0
1,563,258 - Psest_1453 0.45 -1.8
1,563,258 - Psest_1453 0.45 +0.1
1,563,345 - Psest_1453 0.51 -0.7
1,563,345 - Psest_1453 0.51 -0.1
1,563,345 - Psest_1453 0.51 +2.2
1,563,345 - Psest_1453 0.51 -0.3
1,563,362 + Psest_1453 0.52 +0.5
1,563,362 + Psest_1453 0.52 -0.9
1,563,363 - Psest_1453 0.52 -0.6
1,563,363 - Psest_1453 0.52 +1.0
1,563,620 - Psest_1453 0.69 -0.4
1,563,620 - Psest_1453 0.69 -1.0
1,563,620 - Psest_1453 0.69 -0.6
1,563,657 - Psest_1453 0.71 +0.1
1,563,756 - Psest_1453 0.77 -0.6
1,563,793 + Psest_1453 0.80 -0.4
1,563,793 + Psest_1453 0.80 -0.2
1,563,793 + Psest_1453 0.80 +0.3
1,563,794 - Psest_1453 0.80 +0.0
1,563,794 - Psest_1453 0.80 +0.6
1,563,914 + Psest_1453 0.88 +0.4
1,563,939 + Psest_1453 0.89 -2.4
1,563,940 - Psest_1453 0.89 +0.3
1,563,940 - Psest_1453 0.89 -0.8
1,564,067 + -1.1
1,564,067 + -0.3
1,564,112 + -1.2
1,564,113 - +1.0
1,564,115 - +0.3
1,564,115 - -0.1
1,564,115 - -0.5
1,564,115 - -0.8
1,564,115 - +0.1
1,564,115 - +1.8
1,564,115 - -1.8
1,564,115 - +0.4
1,564,115 - +1.2
1,564,119 - -0.7
1,564,119 - +0.2
1,564,163 - +0.5
1,564,168 + +0.9
1,564,234 + Psest_1454 0.12 -1.4
1,564,235 - Psest_1454 0.12 -0.4
1,564,235 - Psest_1454 0.12 +1.0
1,564,235 - Psest_1454 0.12 -0.5
1,564,262 - Psest_1454 0.18 +1.2
1,564,262 - Psest_1454 0.18 -1.1
1,564,549 + Psest_1454 0.79 -0.9
1,564,549 + Psest_1454 0.79 -0.8
1,564,549 + Psest_1454 0.79 +0.2
1,564,549 + Psest_1454 0.79 +0.1
1,564,549 + Psest_1454 0.79 -1.1
1,564,549 + Psest_1454 0.79 -0.7
1,564,549 + Psest_1454 0.79 -1.3
1,564,549 + Psest_1454 0.79 +1.8
1,564,549 + Psest_1454 0.79 -2.2
1,564,549 + Psest_1454 0.79 -0.3
1,564,549 + Psest_1454 0.79 +0.5
1,564,550 - Psest_1454 0.79 +0.7
1,564,550 - Psest_1454 0.79 -0.0
1,564,550 - Psest_1454 0.79 +0.6
1,564,550 - Psest_1454 0.79 +1.2
1,564,550 - Psest_1454 0.79 -0.8
1,564,550 - Psest_1454 0.79 +0.4
1,564,550 - Psest_1454 0.79 +1.5
1,564,550 - Psest_1454 0.79 -0.1
1,564,550 - Psest_1454 0.79 -0.7
1,564,612 - -0.5
1,564,612 - +0.3
1,564,612 - +0.7
1,564,646 - +0.9
1,564,735 + -0.3
1,565,184 - Psest_1455 0.38 +0.1
1,565,206 + Psest_1455 0.40 +0.6
1,565,208 + Psest_1455 0.40 +0.7
1,565,209 - Psest_1455 0.40 +1.3
1,565,227 + Psest_1455 0.42 +0.8
1,565,227 + Psest_1455 0.42 +0.5
1,565,227 + Psest_1455 0.42 +1.1
1,565,227 + Psest_1455 0.42 +0.5
1,565,227 + Psest_1455 0.42 +1.4
1,565,227 + Psest_1455 0.42 +0.7
1,565,227 + Psest_1455 0.42 +0.2
1,565,227 + Psest_1455 0.42 +1.1
1,565,227 + Psest_1455 0.42 +1.3
1,565,227 + Psest_1455 0.42 -0.1
1,565,227 + Psest_1455 0.42 +0.5
1,565,227 + Psest_1455 0.42 -0.2
1,565,227 + Psest_1455 0.42 +0.6
1,565,227 + Psest_1455 0.42 +1.7
1,565,227 + Psest_1455 0.42 -0.3
1,565,227 + Psest_1455 0.42 +0.6
1,565,227 + Psest_1455 0.42 +0.4
1,565,227 + Psest_1455 0.42 +0.3
1,565,227 + Psest_1455 0.42 +1.2
1,565,227 + Psest_1455 0.42 +1.5
1,565,227 + Psest_1455 0.42 +0.4
1,565,227 + Psest_1455 0.42 +0.6
1,565,227 + Psest_1455 0.42 +1.2
1,565,227 + Psest_1455 0.42 +0.1
1,565,227 + Psest_1455 0.42 +0.1
1,565,227 + Psest_1455 0.42 +1.1
1,565,227 + Psest_1455 0.42 +1.0
1,565,227 + Psest_1455 0.42 +1.3
1,565,227 + Psest_1455 0.42 +0.1
1,565,227 + Psest_1455 0.42 +1.1
1,565,227 + Psest_1455 0.42 +0.8
1,565,227 + Psest_1455 0.42 -0.3
1,565,227 + Psest_1455 0.42 +0.5
1,565,227 + Psest_1455 0.42 +0.1
1,565,227 + Psest_1455 0.42 +0.9
1,565,227 + Psest_1455 0.42 +0.2
1,565,227 + Psest_1455 0.42 +0.9
1,565,227 + Psest_1455 0.42 +0.4
1,565,227 + Psest_1455 0.42 +0.1
1,565,227 + Psest_1455 0.42 +0.5
1,565,227 + Psest_1455 0.42 +0.3
1,565,227 + Psest_1455 0.42 +1.6
1,565,227 + Psest_1455 0.42 +0.3
1,565,227 + Psest_1455 0.42 -0.3
1,565,228 - Psest_1455 0.42 +0.3
1,565,228 - Psest_1455 0.42 +0.4
1,565,228 - Psest_1455 0.42 -0.1
1,565,228 - Psest_1455 0.42 -0.3
1,565,228 - Psest_1455 0.42 +1.2
1,565,228 - Psest_1455 0.42 +0.2
1,565,228 - Psest_1455 0.42 -0.5
1,565,228 - Psest_1455 0.42 -0.3
1,565,228 - Psest_1455 0.42 +0.5
1,565,228 - Psest_1455 0.42 +0.7
1,565,228 - Psest_1455 0.42 +0.9
1,565,228 - Psest_1455 0.42 -0.1
1,565,228 - Psest_1455 0.42 -0.3
1,565,228 - Psest_1455 0.42 +0.1
1,565,228 - Psest_1455 0.42 +0.1
1,565,228 - Psest_1455 0.42 +0.2
1,565,228 - Psest_1455 0.42 +0.2
1,565,228 - Psest_1455 0.42 -0.1
1,565,228 - Psest_1455 0.42 +0.6
1,565,228 - Psest_1455 0.42 +0.1
1,565,228 - Psest_1455 0.42 +0.4
1,565,228 - Psest_1455 0.42 +0.4
1,565,228 - Psest_1455 0.42 +0.2
1,565,228 - Psest_1455 0.42 -0.1
1,565,228 - Psest_1455 0.42 +1.1
1,565,228 - Psest_1455 0.42 +0.7
1,565,228 - Psest_1455 0.42 +0.0
1,565,228 - Psest_1455 0.42 +0.6
1,565,228 - Psest_1455 0.42 +0.1
1,565,228 - Psest_1455 0.42 +0.6
1,565,228 - Psest_1455 0.42 -0.0
1,565,228 - Psest_1455 0.42 -0.8
1,565,228 - Psest_1455 0.42 -1.1
1,565,228 - Psest_1455 0.42 +0.5
1,565,228 - Psest_1455 0.42 +0.0
1,565,228 - Psest_1455 0.42 +1.1
1,565,249 + Psest_1455 0.44 +0.4
1,565,281 + Psest_1455 0.47 +0.7
1,565,337 + Psest_1455 0.52 +0.6

Or see this region's nucleotide sequence