Strain Fitness in Dechlorosoma suillum PS around Dsui_3516

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3514 and Dsui_3515 are separated by 6 nucleotidesDsui_3515 and Dsui_3516 are separated by 269 nucleotidesDsui_3516 and Dsui_3517 overlap by 4 nucleotidesDsui_3517 and Dsui_3518 are separated by 84 nucleotides Dsui_3514: Dsui_3514 - 16S rRNA processing protein RimM, at 3,778,647 to 3,779,195 _3514 Dsui_3515: Dsui_3515 - ribosomal protein S16, at 3,779,202 to 3,779,453 _3515 Dsui_3516: Dsui_3516 - hypothetical protein, at 3,779,723 to 3,781,249 _3516 Dsui_3517: Dsui_3517 - putative membrane protein, at 3,781,246 to 3,782,076 _3517 Dsui_3518: Dsui_3518 - putative membrane protein, at 3,782,161 to 3,782,523 _3518 Position (kb) 3779 3780 3781 3782Strain fitness (log2 ratio) -1 0 1 2at 3779.530 kb on - strandat 3779.534 kb on + strandat 3779.535 kb on - strandat 3779.537 kb on - strandat 3779.658 kb on - strandat 3779.665 kb on + strandat 3779.665 kb on + strandat 3779.673 kb on - strandat 3779.673 kb on - strandat 3779.681 kb on - strandat 3779.685 kb on + strandat 3779.685 kb on + strandat 3779.693 kb on - strandat 3779.719 kb on + strandat 3779.754 kb on - strandat 3779.839 kb on + strandat 3779.859 kb on - strandat 3779.906 kb on + strand, within Dsui_3516at 3779.938 kb on - strand, within Dsui_3516at 3779.949 kb on + strand, within Dsui_3516at 3780.001 kb on + strandat 3780.090 kb on - strand, within Dsui_3516at 3780.213 kb on + strand, within Dsui_3516at 3780.294 kb on + strand, within Dsui_3516at 3780.310 kb on - strandat 3780.310 kb on - strand, within Dsui_3516at 3780.331 kb on - strand, within Dsui_3516at 3780.368 kb on - strand, within Dsui_3516at 3780.427 kb on + strand, within Dsui_3516at 3780.446 kb on - strand, within Dsui_3516at 3780.531 kb on - strand, within Dsui_3516at 3780.585 kb on + strand, within Dsui_3516at 3780.619 kb on - strand, within Dsui_3516at 3780.810 kb on + strand, within Dsui_3516at 3780.818 kb on - strand, within Dsui_3516at 3780.846 kb on + strand, within Dsui_3516at 3780.847 kb on + strand, within Dsui_3516at 3780.854 kb on - strand, within Dsui_3516at 3780.855 kb on - strand, within Dsui_3516at 3780.913 kb on + strand, within Dsui_3516at 3780.915 kb on + strand, within Dsui_3516at 3780.963 kb on - strand, within Dsui_3516at 3781.179 kb on + strandat 3781.187 kb on - strandat 3781.207 kb on + strandat 3781.221 kb on - strandat 3781.315 kb on + strandat 3781.327 kb on - strandat 3781.371 kb on + strand, within Dsui_3517at 3781.379 kb on - strand, within Dsui_3517at 3781.386 kb on - strand, within Dsui_3517at 3781.575 kb on + strand, within Dsui_3517at 3781.605 kb on + strand, within Dsui_3517at 3781.605 kb on + strand, within Dsui_3517at 3781.643 kb on + strand, within Dsui_3517at 3781.728 kb on - strand, within Dsui_3517at 3781.750 kb on + strand, within Dsui_3517at 3781.773 kb on + strand, within Dsui_3517at 3781.773 kb on + strand, within Dsui_3517at 3781.820 kb on + strand, within Dsui_3517at 3781.823 kb on - strand, within Dsui_3517at 3781.829 kb on - strand, within Dsui_3517at 3781.879 kb on + strandat 3781.880 kb on + strandat 3781.880 kb on + strand, within Dsui_3517at 3781.880 kb on + strandat 3781.880 kb on + strand, within Dsui_3517at 3781.888 kb on - strand, within Dsui_3517at 3781.888 kb on - strand, within Dsui_3517at 3781.888 kb on - strand, within Dsui_3517at 3781.888 kb on - strand, within Dsui_3517at 3781.965 kb on + strand, within Dsui_3517at 3781.973 kb on + strand, within Dsui_3517at 3781.973 kb on + strand, within Dsui_3517at 3781.981 kb on - strand, within Dsui_3517at 3781.981 kb on - strand, within Dsui_3517at 3782.015 kb on - strandat 3782.065 kb on - strandat 3782.065 kb on - strandat 3782.065 kb on - strandat 3782.109 kb on + strandat 3782.109 kb on + strandat 3782.122 kb on - strandat 3782.171 kb on + strandat 3782.232 kb on - strand, within Dsui_3518

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media
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3,779,530 - +0.5
3,779,534 + +1.3
3,779,535 - +0.7
3,779,537 - -1.3
3,779,658 - +2.3
3,779,665 + +0.3
3,779,665 + +0.5
3,779,673 - -0.9
3,779,673 - -0.0
3,779,681 - +0.3
3,779,685 + +0.1
3,779,685 + -1.4
3,779,693 - -0.0
3,779,719 + -0.2
3,779,754 - -0.3
3,779,839 + +0.6
3,779,859 - +0.7
3,779,906 + Dsui_3516 0.12 -0.5
3,779,938 - Dsui_3516 0.14 +0.4
3,779,949 + Dsui_3516 0.15 +0.3
3,780,001 + +1.7
3,780,090 - Dsui_3516 0.24 -1.2
3,780,213 + Dsui_3516 0.32 -1.2
3,780,294 + Dsui_3516 0.37 +1.3
3,780,310 - -0.7
3,780,310 - Dsui_3516 0.38 +0.1
3,780,331 - Dsui_3516 0.40 -0.1
3,780,368 - Dsui_3516 0.42 -0.8
3,780,427 + Dsui_3516 0.46 +1.3
3,780,446 - Dsui_3516 0.47 +0.3
3,780,531 - Dsui_3516 0.53 -1.4
3,780,585 + Dsui_3516 0.56 -0.9
3,780,619 - Dsui_3516 0.59 -1.0
3,780,810 + Dsui_3516 0.71 -0.8
3,780,818 - Dsui_3516 0.72 +0.5
3,780,846 + Dsui_3516 0.74 -1.5
3,780,847 + Dsui_3516 0.74 -0.5
3,780,854 - Dsui_3516 0.74 -1.4
3,780,855 - Dsui_3516 0.74 -0.5
3,780,913 + Dsui_3516 0.78 -0.7
3,780,915 + Dsui_3516 0.78 -0.1
3,780,963 - Dsui_3516 0.81 +0.0
3,781,179 + -0.0
3,781,187 - -0.9
3,781,207 + +0.4
3,781,221 - -0.0
3,781,315 + -1.2
3,781,327 - +0.2
3,781,371 + Dsui_3517 0.15 -0.3
3,781,379 - Dsui_3517 0.16 +0.7
3,781,386 - Dsui_3517 0.17 -0.5
3,781,575 + Dsui_3517 0.40 +0.6
3,781,605 + Dsui_3517 0.43 -0.0
3,781,605 + Dsui_3517 0.43 -0.5
3,781,643 + Dsui_3517 0.48 -0.0
3,781,728 - Dsui_3517 0.58 +0.5
3,781,750 + Dsui_3517 0.61 -0.9
3,781,773 + Dsui_3517 0.63 -1.5
3,781,773 + Dsui_3517 0.63 +1.0
3,781,820 + Dsui_3517 0.69 +0.7
3,781,823 - Dsui_3517 0.69 -0.5
3,781,829 - Dsui_3517 0.70 -0.5
3,781,879 + +0.3
3,781,880 + +1.9
3,781,880 + Dsui_3517 0.76 -0.7
3,781,880 + +1.7
3,781,880 + Dsui_3517 0.76 +0.4
3,781,888 - Dsui_3517 0.77 -0.5
3,781,888 - Dsui_3517 0.77 -0.1
3,781,888 - Dsui_3517 0.77 -0.3
3,781,888 - Dsui_3517 0.77 +0.2
3,781,965 + Dsui_3517 0.87 +0.2
3,781,973 + Dsui_3517 0.87 +0.5
3,781,973 + Dsui_3517 0.87 -0.1
3,781,981 - Dsui_3517 0.88 -0.2
3,781,981 - Dsui_3517 0.88 -0.4
3,782,015 - +1.3
3,782,065 - -0.2
3,782,065 - -0.3
3,782,065 - -0.5
3,782,109 + -0.1
3,782,109 + +0.1
3,782,122 - +1.1
3,782,171 + -0.8
3,782,232 - Dsui_3518 0.20 -1.1

Or see this region's nucleotide sequence