Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3514 and Dsui_3515 are separated by 6 nucleotides Dsui_3515 and Dsui_3516 are separated by 269 nucleotides Dsui_3516 and Dsui_3517 overlap by 4 nucleotides Dsui_3517 and Dsui_3518 are separated by 84 nucleotides
Dsui_3514: Dsui_3514 - 16S rRNA processing protein RimM, at 3,778,647 to 3,779,195
_3514
Dsui_3515: Dsui_3515 - ribosomal protein S16, at 3,779,202 to 3,779,453
_3515
Dsui_3516: Dsui_3516 - hypothetical protein, at 3,779,723 to 3,781,249
_3516
Dsui_3517: Dsui_3517 - putative membrane protein, at 3,781,246 to 3,782,076
_3517
Dsui_3518: Dsui_3518 - putative membrane protein, at 3,782,161 to 3,782,523
_3518
Position (kb)
3779
3780
3781
3782 Strain fitness (log2 ratio)
-1
0
1
2 at 3779.530 kb on - strand at 3779.534 kb on + strand at 3779.535 kb on - strand at 3779.537 kb on - strand at 3779.658 kb on - strand at 3779.665 kb on + strand at 3779.665 kb on + strand at 3779.673 kb on - strand at 3779.673 kb on - strand at 3779.681 kb on - strand at 3779.685 kb on + strand at 3779.685 kb on + strand at 3779.693 kb on - strand at 3779.719 kb on + strand at 3779.754 kb on - strand at 3779.839 kb on + strand at 3779.859 kb on - strand at 3779.906 kb on + strand, within Dsui_3516 at 3779.938 kb on - strand, within Dsui_3516 at 3779.949 kb on + strand, within Dsui_3516 at 3780.001 kb on + strand at 3780.090 kb on - strand, within Dsui_3516 at 3780.213 kb on + strand, within Dsui_3516 at 3780.294 kb on + strand, within Dsui_3516 at 3780.310 kb on - strand at 3780.310 kb on - strand, within Dsui_3516 at 3780.331 kb on - strand, within Dsui_3516 at 3780.368 kb on - strand, within Dsui_3516 at 3780.427 kb on + strand, within Dsui_3516 at 3780.446 kb on - strand, within Dsui_3516 at 3780.531 kb on - strand, within Dsui_3516 at 3780.585 kb on + strand, within Dsui_3516 at 3780.619 kb on - strand, within Dsui_3516 at 3780.810 kb on + strand, within Dsui_3516 at 3780.818 kb on - strand, within Dsui_3516 at 3780.846 kb on + strand, within Dsui_3516 at 3780.847 kb on + strand, within Dsui_3516 at 3780.854 kb on - strand, within Dsui_3516 at 3780.855 kb on - strand, within Dsui_3516 at 3780.913 kb on + strand, within Dsui_3516 at 3780.915 kb on + strand, within Dsui_3516 at 3780.963 kb on - strand, within Dsui_3516 at 3781.179 kb on + strand at 3781.187 kb on - strand at 3781.207 kb on + strand at 3781.221 kb on - strand at 3781.315 kb on + strand at 3781.327 kb on - strand at 3781.371 kb on + strand, within Dsui_3517 at 3781.379 kb on - strand, within Dsui_3517 at 3781.386 kb on - strand, within Dsui_3517 at 3781.575 kb on + strand, within Dsui_3517 at 3781.605 kb on + strand, within Dsui_3517 at 3781.605 kb on + strand, within Dsui_3517 at 3781.643 kb on + strand, within Dsui_3517 at 3781.728 kb on - strand, within Dsui_3517 at 3781.750 kb on + strand, within Dsui_3517 at 3781.773 kb on + strand, within Dsui_3517 at 3781.773 kb on + strand, within Dsui_3517 at 3781.820 kb on + strand, within Dsui_3517 at 3781.823 kb on - strand, within Dsui_3517 at 3781.829 kb on - strand, within Dsui_3517 at 3781.879 kb on + strand at 3781.880 kb on + strand at 3781.880 kb on + strand, within Dsui_3517 at 3781.880 kb on + strand at 3781.880 kb on + strand, within Dsui_3517 at 3781.888 kb on - strand, within Dsui_3517 at 3781.888 kb on - strand, within Dsui_3517 at 3781.888 kb on - strand, within Dsui_3517 at 3781.888 kb on - strand, within Dsui_3517 at 3781.965 kb on + strand, within Dsui_3517 at 3781.973 kb on + strand, within Dsui_3517 at 3781.973 kb on + strand, within Dsui_3517 at 3781.981 kb on - strand, within Dsui_3517 at 3781.981 kb on - strand, within Dsui_3517 at 3782.015 kb on - strand at 3782.065 kb on - strand at 3782.065 kb on - strand at 3782.065 kb on - strand at 3782.109 kb on + strand at 3782.109 kb on + strand at 3782.122 kb on - strand at 3782.171 kb on + strand at 3782.232 kb on - strand, within Dsui_3518
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 3,779,530 - +0.5 3,779,534 + +1.3 3,779,535 - +0.7 3,779,537 - -1.3 3,779,658 - +2.3 3,779,665 + +0.3 3,779,665 + +0.5 3,779,673 - -0.9 3,779,673 - -0.0 3,779,681 - +0.3 3,779,685 + +0.1 3,779,685 + -1.4 3,779,693 - -0.0 3,779,719 + -0.2 3,779,754 - -0.3 3,779,839 + +0.6 3,779,859 - +0.7 3,779,906 + Dsui_3516 0.12 -0.5 3,779,938 - Dsui_3516 0.14 +0.4 3,779,949 + Dsui_3516 0.15 +0.3 3,780,001 + +1.7 3,780,090 - Dsui_3516 0.24 -1.2 3,780,213 + Dsui_3516 0.32 -1.2 3,780,294 + Dsui_3516 0.37 +1.3 3,780,310 - -0.7 3,780,310 - Dsui_3516 0.38 +0.1 3,780,331 - Dsui_3516 0.40 -0.1 3,780,368 - Dsui_3516 0.42 -0.8 3,780,427 + Dsui_3516 0.46 +1.3 3,780,446 - Dsui_3516 0.47 +0.3 3,780,531 - Dsui_3516 0.53 -1.4 3,780,585 + Dsui_3516 0.56 -0.9 3,780,619 - Dsui_3516 0.59 -1.0 3,780,810 + Dsui_3516 0.71 -0.8 3,780,818 - Dsui_3516 0.72 +0.5 3,780,846 + Dsui_3516 0.74 -1.5 3,780,847 + Dsui_3516 0.74 -0.5 3,780,854 - Dsui_3516 0.74 -1.4 3,780,855 - Dsui_3516 0.74 -0.5 3,780,913 + Dsui_3516 0.78 -0.7 3,780,915 + Dsui_3516 0.78 -0.1 3,780,963 - Dsui_3516 0.81 +0.0 3,781,179 + -0.0 3,781,187 - -0.9 3,781,207 + +0.4 3,781,221 - -0.0 3,781,315 + -1.2 3,781,327 - +0.2 3,781,371 + Dsui_3517 0.15 -0.3 3,781,379 - Dsui_3517 0.16 +0.7 3,781,386 - Dsui_3517 0.17 -0.5 3,781,575 + Dsui_3517 0.40 +0.6 3,781,605 + Dsui_3517 0.43 -0.0 3,781,605 + Dsui_3517 0.43 -0.5 3,781,643 + Dsui_3517 0.48 -0.0 3,781,728 - Dsui_3517 0.58 +0.5 3,781,750 + Dsui_3517 0.61 -0.9 3,781,773 + Dsui_3517 0.63 -1.5 3,781,773 + Dsui_3517 0.63 +1.0 3,781,820 + Dsui_3517 0.69 +0.7 3,781,823 - Dsui_3517 0.69 -0.5 3,781,829 - Dsui_3517 0.70 -0.5 3,781,879 + +0.3 3,781,880 + +1.9 3,781,880 + Dsui_3517 0.76 -0.7 3,781,880 + +1.7 3,781,880 + Dsui_3517 0.76 +0.4 3,781,888 - Dsui_3517 0.77 -0.5 3,781,888 - Dsui_3517 0.77 -0.1 3,781,888 - Dsui_3517 0.77 -0.3 3,781,888 - Dsui_3517 0.77 +0.2 3,781,965 + Dsui_3517 0.87 +0.2 3,781,973 + Dsui_3517 0.87 +0.5 3,781,973 + Dsui_3517 0.87 -0.1 3,781,981 - Dsui_3517 0.88 -0.2 3,781,981 - Dsui_3517 0.88 -0.4 3,782,015 - +1.3 3,782,065 - -0.2 3,782,065 - -0.3 3,782,065 - -0.5 3,782,109 + -0.1 3,782,109 + +0.1 3,782,122 - +1.1 3,782,171 + -0.8 3,782,232 - Dsui_3518 0.20 -1.1
Or see this region's nucleotide sequence