Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3288 and Dsui_3289 are separated by 150 nucleotides Dsui_3289 and Dsui_3290 are separated by 57 nucleotides Dsui_3290 and Dsui_3291 overlap by 4 nucleotides Dsui_3291 and Dsui_3292 are separated by 93 nucleotides Dsui_3292 and Dsui_3293 overlap by 62 nucleotides
Dsui_3288: Dsui_3288 - anti-anti-sigma factor, at 3,530,513 to 3,530,824
_3288
Dsui_3289: Dsui_3289 - hypothetical protein, at 3,530,975 to 3,531,568
_3289
Dsui_3290: Dsui_3290 - 4-hydroxybenzoate synthetase (chorismate lyase), at 3,531,626 to 3,532,171
_3290
Dsui_3291: Dsui_3291 - hypothetical protein, at 3,532,168 to 3,532,626
_3291
Dsui_3292: Dsui_3292 - hypothetical protein, at 3,532,720 to 3,532,878
_3292
Dsui_3293: Dsui_3293 - pseudouridine synthase family protein, at 3,532,817 to 3,533,482
_3293
Position (kb)
3531
3532
3533 Strain fitness (log2 ratio)
-1
0
1
2 at 3530.745 kb on + strand, within Dsui_3288 at 3530.753 kb on - strand, within Dsui_3288 at 3530.753 kb on - strand, within Dsui_3288 at 3530.759 kb on - strand, within Dsui_3288 at 3530.773 kb on - strand, within Dsui_3288 at 3530.776 kb on - strand, within Dsui_3288 at 3530.790 kb on + strand at 3530.798 kb on - strand at 3530.854 kb on + strand at 3530.858 kb on + strand at 3530.900 kb on + strand at 3530.954 kb on - strand at 3530.993 kb on + strand at 3531.030 kb on + strand at 3531.030 kb on + strand at 3531.038 kb on - strand, within Dsui_3289 at 3531.038 kb on - strand, within Dsui_3289 at 3531.174 kb on - strand, within Dsui_3289 at 3531.232 kb on + strand at 3531.280 kb on - strand, within Dsui_3289 at 3531.281 kb on + strand at 3531.330 kb on - strand, within Dsui_3289 at 3531.379 kb on - strand, within Dsui_3289 at 3531.384 kb on - strand, within Dsui_3289 at 3531.595 kb on - strand at 3531.598 kb on + strand at 3531.603 kb on + strand at 3531.650 kb on - strand at 3531.769 kb on + strand at 3531.898 kb on - strand, within Dsui_3290 at 3531.959 kb on - strand, within Dsui_3290 at 3531.984 kb on - strand, within Dsui_3290 at 3531.991 kb on + strand, within Dsui_3290 at 3532.195 kb on - strand at 3532.203 kb on + strand at 3532.203 kb on + strand at 3532.306 kb on - strand, within Dsui_3291 at 3532.484 kb on + strand, within Dsui_3291 at 3532.492 kb on - strand, within Dsui_3291 at 3532.492 kb on - strand, within Dsui_3291 at 3532.527 kb on + strand at 3532.672 kb on - strand at 3532.674 kb on + strand at 3532.682 kb on - strand at 3532.848 kb on + strand at 3532.848 kb on + strand at 3532.856 kb on - strand at 3532.856 kb on - strand at 3533.028 kb on - strand, within Dsui_3293 at 3533.033 kb on - strand, within Dsui_3293 at 3533.128 kb on - strand, within Dsui_3293 at 3533.169 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 3,530,745 + Dsui_3288 0.74 -1.7 3,530,753 - Dsui_3288 0.77 -0.7 3,530,753 - Dsui_3288 0.77 -0.3 3,530,759 - Dsui_3288 0.79 +0.0 3,530,773 - Dsui_3288 0.83 -0.9 3,530,776 - Dsui_3288 0.84 -0.5 3,530,790 + +0.9 3,530,798 - -0.4 3,530,854 + +0.2 3,530,858 + +0.7 3,530,900 + +0.7 3,530,954 - +0.4 3,530,993 + +0.2 3,531,030 + +0.1 3,531,030 + +2.2 3,531,038 - Dsui_3289 0.11 +0.2 3,531,038 - Dsui_3289 0.11 +0.1 3,531,174 - Dsui_3289 0.34 -0.1 3,531,232 + +1.7 3,531,280 - Dsui_3289 0.51 +0.2 3,531,281 + +2.2 3,531,330 - Dsui_3289 0.60 +0.6 3,531,379 - Dsui_3289 0.68 +0.3 3,531,384 - Dsui_3289 0.69 +0.4 3,531,595 - +0.2 3,531,598 + +2.2 3,531,603 + +0.2 3,531,650 - -1.0 3,531,769 + +1.2 3,531,898 - Dsui_3290 0.50 -1.1 3,531,959 - Dsui_3290 0.61 -1.5 3,531,984 - Dsui_3290 0.66 -0.9 3,531,991 + Dsui_3290 0.67 +0.2 3,532,195 - +1.8 3,532,203 + -0.1 3,532,203 + +2.2 3,532,306 - Dsui_3291 0.30 -0.5 3,532,484 + Dsui_3291 0.69 +0.4 3,532,492 - Dsui_3291 0.71 +1.3 3,532,492 - Dsui_3291 0.71 +1.2 3,532,527 + +0.7 3,532,672 - -0.6 3,532,674 + +0.0 3,532,682 - +0.2 3,532,848 + -0.1 3,532,848 + -0.6 3,532,856 - -1.7 3,532,856 - +0.7 3,533,028 - Dsui_3293 0.32 -0.5 3,533,033 - Dsui_3293 0.32 -0.5 3,533,128 - Dsui_3293 0.47 -1.6 3,533,169 - +0.9
Or see this region's nucleotide sequence