Strain Fitness in Dechlorosoma suillum PS around Dsui_3290

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3288 and Dsui_3289 are separated by 150 nucleotidesDsui_3289 and Dsui_3290 are separated by 57 nucleotidesDsui_3290 and Dsui_3291 overlap by 4 nucleotidesDsui_3291 and Dsui_3292 are separated by 93 nucleotidesDsui_3292 and Dsui_3293 overlap by 62 nucleotides Dsui_3288: Dsui_3288 - anti-anti-sigma factor, at 3,530,513 to 3,530,824 _3288 Dsui_3289: Dsui_3289 - hypothetical protein, at 3,530,975 to 3,531,568 _3289 Dsui_3290: Dsui_3290 - 4-hydroxybenzoate synthetase (chorismate lyase), at 3,531,626 to 3,532,171 _3290 Dsui_3291: Dsui_3291 - hypothetical protein, at 3,532,168 to 3,532,626 _3291 Dsui_3292: Dsui_3292 - hypothetical protein, at 3,532,720 to 3,532,878 _3292 Dsui_3293: Dsui_3293 - pseudouridine synthase family protein, at 3,532,817 to 3,533,482 _3293 Position (kb) 3531 3532 3533Strain fitness (log2 ratio) -1 0 1 2at 3530.745 kb on + strand, within Dsui_3288at 3530.753 kb on - strand, within Dsui_3288at 3530.753 kb on - strand, within Dsui_3288at 3530.759 kb on - strand, within Dsui_3288at 3530.773 kb on - strand, within Dsui_3288at 3530.776 kb on - strand, within Dsui_3288at 3530.790 kb on + strandat 3530.798 kb on - strandat 3530.854 kb on + strandat 3530.858 kb on + strandat 3530.900 kb on + strandat 3530.954 kb on - strandat 3530.993 kb on + strandat 3531.030 kb on + strandat 3531.030 kb on + strandat 3531.038 kb on - strand, within Dsui_3289at 3531.038 kb on - strand, within Dsui_3289at 3531.174 kb on - strand, within Dsui_3289at 3531.232 kb on + strandat 3531.280 kb on - strand, within Dsui_3289at 3531.281 kb on + strandat 3531.330 kb on - strand, within Dsui_3289at 3531.379 kb on - strand, within Dsui_3289at 3531.384 kb on - strand, within Dsui_3289at 3531.595 kb on - strandat 3531.598 kb on + strandat 3531.603 kb on + strandat 3531.650 kb on - strandat 3531.769 kb on + strandat 3531.898 kb on - strand, within Dsui_3290at 3531.959 kb on - strand, within Dsui_3290at 3531.984 kb on - strand, within Dsui_3290at 3531.991 kb on + strand, within Dsui_3290at 3532.195 kb on - strandat 3532.203 kb on + strandat 3532.203 kb on + strandat 3532.306 kb on - strand, within Dsui_3291at 3532.484 kb on + strand, within Dsui_3291at 3532.492 kb on - strand, within Dsui_3291at 3532.492 kb on - strand, within Dsui_3291at 3532.527 kb on + strandat 3532.672 kb on - strandat 3532.674 kb on + strandat 3532.682 kb on - strandat 3532.848 kb on + strandat 3532.848 kb on + strandat 3532.856 kb on - strandat 3532.856 kb on - strandat 3533.028 kb on - strand, within Dsui_3293at 3533.033 kb on - strand, within Dsui_3293at 3533.128 kb on - strand, within Dsui_3293at 3533.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media
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3,530,745 + Dsui_3288 0.74 -1.7
3,530,753 - Dsui_3288 0.77 -0.7
3,530,753 - Dsui_3288 0.77 -0.3
3,530,759 - Dsui_3288 0.79 +0.0
3,530,773 - Dsui_3288 0.83 -0.9
3,530,776 - Dsui_3288 0.84 -0.5
3,530,790 + +0.9
3,530,798 - -0.4
3,530,854 + +0.2
3,530,858 + +0.7
3,530,900 + +0.7
3,530,954 - +0.4
3,530,993 + +0.2
3,531,030 + +0.1
3,531,030 + +2.2
3,531,038 - Dsui_3289 0.11 +0.2
3,531,038 - Dsui_3289 0.11 +0.1
3,531,174 - Dsui_3289 0.34 -0.1
3,531,232 + +1.7
3,531,280 - Dsui_3289 0.51 +0.2
3,531,281 + +2.2
3,531,330 - Dsui_3289 0.60 +0.6
3,531,379 - Dsui_3289 0.68 +0.3
3,531,384 - Dsui_3289 0.69 +0.4
3,531,595 - +0.2
3,531,598 + +2.2
3,531,603 + +0.2
3,531,650 - -1.0
3,531,769 + +1.2
3,531,898 - Dsui_3290 0.50 -1.1
3,531,959 - Dsui_3290 0.61 -1.5
3,531,984 - Dsui_3290 0.66 -0.9
3,531,991 + Dsui_3290 0.67 +0.2
3,532,195 - +1.8
3,532,203 + -0.1
3,532,203 + +2.2
3,532,306 - Dsui_3291 0.30 -0.5
3,532,484 + Dsui_3291 0.69 +0.4
3,532,492 - Dsui_3291 0.71 +1.3
3,532,492 - Dsui_3291 0.71 +1.2
3,532,527 + +0.7
3,532,672 - -0.6
3,532,674 + +0.0
3,532,682 - +0.2
3,532,848 + -0.1
3,532,848 + -0.6
3,532,856 - -1.7
3,532,856 - +0.7
3,533,028 - Dsui_3293 0.32 -0.5
3,533,033 - Dsui_3293 0.32 -0.5
3,533,128 - Dsui_3293 0.47 -1.6
3,533,169 - +0.9

Or see this region's nucleotide sequence