Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2998 and Dsui_2999 are separated by 4 nucleotides Dsui_2999 and Dsui_3000 are separated by 9 nucleotides
Dsui_2998: Dsui_2998 - ABC-type phosphate/phosphonate transport system, periplasmic component, at 3,207,936 to 3,208,802
_2998
Dsui_2999: Dsui_2999 - histidine kinase,HAMP domain-containing protein,histidine kinase, at 3,208,807 to 3,210,237
_2999
Dsui_3000: Dsui_3000 - putative domain HDIG-containing protein, at 3,210,247 to 3,211,278
_3000
Position (kb)
3208
3209
3210
3211 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3207.968 kb on + strand at 3207.978 kb on + strand at 3208.055 kb on + strand, within Dsui_2998 at 3208.055 kb on + strand, within Dsui_2998 at 3208.055 kb on + strand, within Dsui_2998 at 3208.063 kb on - strand at 3208.063 kb on - strand at 3208.199 kb on + strand, within Dsui_2998 at 3208.248 kb on - strand at 3208.329 kb on + strand, within Dsui_2998 at 3208.393 kb on + strand, within Dsui_2998 at 3208.414 kb on - strand at 3208.492 kb on + strand, within Dsui_2998 at 3208.500 kb on - strand at 3208.575 kb on + strand, within Dsui_2998 at 3208.612 kb on - strand, within Dsui_2998 at 3208.657 kb on + strand, within Dsui_2998 at 3208.662 kb on + strand, within Dsui_2998 at 3208.670 kb on - strand at 3208.840 kb on + strand at 3208.845 kb on + strand at 3208.845 kb on + strand at 3209.034 kb on + strand, within Dsui_2999 at 3209.051 kb on - strand, within Dsui_2999 at 3209.087 kb on - strand, within Dsui_2999 at 3209.213 kb on - strand, within Dsui_2999 at 3209.447 kb on - strand at 3209.447 kb on - strand at 3209.457 kb on - strand, within Dsui_2999 at 3209.528 kb on + strand, within Dsui_2999 at 3209.677 kb on + strand, within Dsui_2999 at 3209.685 kb on - strand at 3209.712 kb on + strand, within Dsui_2999 at 3209.800 kb on - strand at 3209.909 kb on + strand, within Dsui_2999 at 3209.919 kb on + strand, within Dsui_2999 at 3210.096 kb on + strand at 3210.123 kb on - strand at 3210.123 kb on - strand at 3210.123 kb on - strand at 3210.123 kb on - strand at 3210.127 kb on + strand at 3210.156 kb on + strand at 3210.193 kb on + strand at 3210.202 kb on - strand at 3210.252 kb on + strand at 3210.252 kb on + strand at 3210.254 kb on + strand at 3210.254 kb on + strand at 3210.262 kb on - strand at 3210.267 kb on - strand at 3210.269 kb on + strand at 3210.292 kb on + strand at 3210.300 kb on - strand at 3210.301 kb on - strand at 3210.529 kb on + strand, within Dsui_3000 at 3210.648 kb on - strand, within Dsui_3000 at 3210.718 kb on + strand, within Dsui_3000 at 3210.726 kb on - strand, within Dsui_3000 at 3210.755 kb on - strand, within Dsui_3000 at 3210.755 kb on - strand, within Dsui_3000 at 3210.782 kb on - strand, within Dsui_3000 at 3210.976 kb on + strand, within Dsui_3000 at 3210.977 kb on - strand, within Dsui_3000 at 3211.027 kb on + strand, within Dsui_3000 at 3211.114 kb on + strand, within Dsui_3000 at 3211.154 kb on + strand, within Dsui_3000 at 3211.213 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 3,207,968 + -0.6 3,207,978 + -0.7 3,208,055 + Dsui_2998 0.14 -0.3 3,208,055 + Dsui_2998 0.14 -0.2 3,208,055 + Dsui_2998 0.14 -1.2 3,208,063 - +0.2 3,208,063 - +2.2 3,208,199 + Dsui_2998 0.30 -0.6 3,208,248 - +1.2 3,208,329 + Dsui_2998 0.45 -0.4 3,208,393 + Dsui_2998 0.53 -0.1 3,208,414 - -0.3 3,208,492 + Dsui_2998 0.64 +0.5 3,208,500 - -0.3 3,208,575 + Dsui_2998 0.74 -0.1 3,208,612 - Dsui_2998 0.78 +0.2 3,208,657 + Dsui_2998 0.83 -1.3 3,208,662 + Dsui_2998 0.84 -1.3 3,208,670 - +1.2 3,208,840 + -1.9 3,208,845 + +0.1 3,208,845 + -0.4 3,209,034 + Dsui_2999 0.16 -0.6 3,209,051 - Dsui_2999 0.17 -0.6 3,209,087 - Dsui_2999 0.20 -1.1 3,209,213 - Dsui_2999 0.28 -1.8 3,209,447 - -0.8 3,209,447 - +2.2 3,209,457 - Dsui_2999 0.45 -0.8 3,209,528 + Dsui_2999 0.50 +0.2 3,209,677 + Dsui_2999 0.61 -0.8 3,209,685 - +1.2 3,209,712 + Dsui_2999 0.63 +0.1 3,209,800 - +0.9 3,209,909 + Dsui_2999 0.77 -0.6 3,209,919 + Dsui_2999 0.78 -0.8 3,210,096 + -0.6 3,210,123 - -0.1 3,210,123 - +0.5 3,210,123 - +0.2 3,210,123 - +1.0 3,210,127 + -0.2 3,210,156 + +0.6 3,210,193 + +0.1 3,210,202 - +0.4 3,210,252 + +0.1 3,210,252 + -0.0 3,210,254 + +0.5 3,210,254 + +0.7 3,210,262 - -0.8 3,210,267 - -0.3 3,210,269 + +0.0 3,210,292 + -0.1 3,210,300 - +0.6 3,210,301 - -0.9 3,210,529 + Dsui_3000 0.27 -0.2 3,210,648 - Dsui_3000 0.39 -1.1 3,210,718 + Dsui_3000 0.46 -0.1 3,210,726 - Dsui_3000 0.46 +0.4 3,210,755 - Dsui_3000 0.49 -0.7 3,210,755 - Dsui_3000 0.49 +0.4 3,210,782 - Dsui_3000 0.52 +0.7 3,210,976 + Dsui_3000 0.71 -0.2 3,210,977 - Dsui_3000 0.71 +0.4 3,211,027 + Dsui_3000 0.76 +0.5 3,211,114 + Dsui_3000 0.84 -0.1 3,211,154 + Dsui_3000 0.88 +0.2 3,211,213 + +0.2
Or see this region's nucleotide sequence