Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2223 and Dsui_2224 are separated by 4 nucleotides Dsui_2224 and Dsui_2225 are separated by 170 nucleotides Dsui_2225 and Dsui_2226 are separated by 229 nucleotides
Dsui_2223: Dsui_2223 - putative ATP-dependent protease, at 2,363,741 to 2,366,266
_2223
Dsui_2224: Dsui_2224 - hypothetical protein, at 2,366,271 to 2,366,747
_2224
Dsui_2225: Dsui_2225 - hypothetical protein, at 2,366,918 to 2,367,067
_2225
Dsui_2226: Dsui_2226 - DNA-binding domain-containing protein, AraC-type, at 2,367,297 to 2,368,181
_2226
Position (kb)
2366
2367 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2365.360 kb on - strand at 2365.395 kb on + strand, within Dsui_2223 at 2365.514 kb on + strand, within Dsui_2223 at 2365.528 kb on + strand, within Dsui_2223 at 2365.598 kb on + strand, within Dsui_2223 at 2365.606 kb on - strand at 2365.617 kb on + strand, within Dsui_2223 at 2365.677 kb on + strand, within Dsui_2223 at 2365.677 kb on + strand, within Dsui_2223 at 2365.793 kb on + strand, within Dsui_2223 at 2365.814 kb on - strand at 2365.828 kb on - strand at 2365.833 kb on - strand at 2366.029 kb on + strand at 2366.176 kb on + strand at 2366.205 kb on - strand at 2366.344 kb on + strand, within Dsui_2224 at 2366.431 kb on - strand, within Dsui_2224 at 2366.632 kb on + strand, within Dsui_2224 at 2366.632 kb on + strand, within Dsui_2224 at 2366.640 kb on - strand at 2366.691 kb on - strand at 2366.741 kb on + strand at 2366.777 kb on + strand at 2366.854 kb on - strand at 2366.894 kb on - strand at 2367.117 kb on + strand at 2367.127 kb on + strand at 2367.138 kb on + strand at 2367.343 kb on + strand at 2367.491 kb on + strand, within Dsui_2226 at 2367.492 kb on + strand, within Dsui_2226 at 2367.510 kb on - strand at 2367.519 kb on + strand, within Dsui_2226 at 2367.524 kb on + strand, within Dsui_2226 at 2367.527 kb on - strand, within Dsui_2226 at 2367.527 kb on - strand, within Dsui_2226 at 2367.533 kb on - strand at 2367.629 kb on + strand, within Dsui_2226 at 2367.728 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 2,365,360 - +0.0 2,365,395 + Dsui_2223 0.65 +0.0 2,365,514 + Dsui_2223 0.70 +0.7 2,365,528 + Dsui_2223 0.71 -0.3 2,365,598 + Dsui_2223 0.74 -0.8 2,365,606 - +2.3 2,365,617 + Dsui_2223 0.74 -1.1 2,365,677 + Dsui_2223 0.77 -0.5 2,365,677 + Dsui_2223 0.77 -0.1 2,365,793 + Dsui_2223 0.81 -0.5 2,365,814 - +1.7 2,365,828 - +2.3 2,365,833 - +1.7 2,366,029 + +0.0 2,366,176 + -0.2 2,366,205 - +0.5 2,366,344 + Dsui_2224 0.15 -0.3 2,366,431 - Dsui_2224 0.34 +0.0 2,366,632 + Dsui_2224 0.76 -0.5 2,366,632 + Dsui_2224 0.76 -0.1 2,366,640 - +1.3 2,366,691 - +2.3 2,366,741 + +0.4 2,366,777 + -1.0 2,366,854 - -0.3 2,366,894 - +1.3 2,367,117 + +0.0 2,367,127 + -1.0 2,367,138 + -0.3 2,367,343 + +0.5 2,367,491 + Dsui_2226 0.22 +0.7 2,367,492 + Dsui_2226 0.22 +0.1 2,367,510 - +3.3 2,367,519 + Dsui_2226 0.25 -1.0 2,367,524 + Dsui_2226 0.26 -1.3 2,367,527 - Dsui_2226 0.26 +0.6 2,367,527 - Dsui_2226 0.26 +0.0 2,367,533 - +2.3 2,367,629 + Dsui_2226 0.38 -0.8 2,367,728 - +2.3
Or see this region's nucleotide sequence