Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2125 and Dsui_2126 are separated by 197 nucleotides Dsui_2126 and Dsui_2127 are separated by 67 nucleotides Dsui_2127 and Dsui_2128 are separated by 143 nucleotides
Dsui_2125: Dsui_2125 - PAS domain S-box, at 2,251,301 to 2,254,285
_2125
Dsui_2126: Dsui_2126 - alanine dehydrogenase, at 2,254,483 to 2,255,574
_2126
Dsui_2127: Dsui_2127 - flavodoxin reductase family protein, at 2,255,642 to 2,256,430
_2127
Dsui_2128: Dsui_2128 - uncharacterized protein involved in outer membrane biogenesis, at 2,256,574 to 2,259,795
_2128
Position (kb)
2254
2255
2256 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2253.560 kb on + strand at 2253.601 kb on - strand, within Dsui_2125 at 2253.682 kb on - strand, within Dsui_2125 at 2253.690 kb on + strand at 2253.737 kb on - strand at 2253.869 kb on - strand, within Dsui_2125 at 2253.869 kb on - strand at 2254.177 kb on + strand at 2254.177 kb on + strand at 2254.222 kb on + strand at 2254.230 kb on - strand at 2254.235 kb on + strand at 2254.336 kb on + strand at 2254.342 kb on - strand at 2254.393 kb on - strand at 2254.422 kb on + strand at 2254.444 kb on + strand at 2254.553 kb on - strand at 2254.675 kb on - strand, within Dsui_2126 at 2254.770 kb on - strand, within Dsui_2126 at 2255.248 kb on - strand, within Dsui_2126 at 2255.255 kb on + strand at 2255.517 kb on + strand at 2255.847 kb on - strand at 2255.990 kb on - strand at 2256.090 kb on - strand, within Dsui_2127 at 2256.123 kb on - strand at 2256.128 kb on - strand at 2256.128 kb on - strand, within Dsui_2127 at 2256.172 kb on + strand, within Dsui_2127 at 2256.440 kb on + strand at 2256.440 kb on + strand at 2256.448 kb on - strand at 2256.448 kb on - strand at 2256.491 kb on + strand at 2256.499 kb on - strand at 2256.571 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 2,253,560 + +1.4 2,253,601 - Dsui_2125 0.77 -0.1 2,253,682 - Dsui_2125 0.80 -0.4 2,253,690 + +0.0 2,253,737 - +1.4 2,253,869 - Dsui_2125 0.86 +0.0 2,253,869 - +0.4 2,254,177 + +1.4 2,254,177 + +0.0 2,254,222 + +1.2 2,254,230 - +0.2 2,254,235 + +0.8 2,254,336 + +1.6 2,254,342 - +0.9 2,254,393 - -0.8 2,254,422 + +1.9 2,254,444 + +1.4 2,254,553 - +0.1 2,254,675 - Dsui_2126 0.18 +0.1 2,254,770 - Dsui_2126 0.26 -1.2 2,255,248 - Dsui_2126 0.70 -0.3 2,255,255 + +0.8 2,255,517 + -0.2 2,255,847 - +1.8 2,255,990 - +2.8 2,256,090 - Dsui_2127 0.57 +0.3 2,256,123 - +0.4 2,256,128 - +1.4 2,256,128 - Dsui_2127 0.62 -0.0 2,256,172 + Dsui_2127 0.67 +0.9 2,256,440 + -0.5 2,256,440 + -0.2 2,256,448 - -0.5 2,256,448 - +1.8 2,256,491 + -0.6 2,256,499 - +0.0 2,256,571 + -0.5
Or see this region's nucleotide sequence