Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1908 and Dsui_1910 are separated by 362 nucleotides Dsui_1910 and Dsui_1911 are separated by 134 nucleotides Dsui_1911 and Dsui_1912 are separated by 159 nucleotides Dsui_1912 and Dsui_1913 are separated by 1 nucleotides
Dsui_1908: Dsui_1908 - putative Fe-S-cluster redox enzyme, at 2,011,340 to 2,012,671
_1908
Dsui_1910: Dsui_1910 - hypothetical protein, at 2,013,034 to 2,013,381
_1910
Dsui_1911: Dsui_1911 - ParB-like partition protein, at 2,013,516 to 2,014,454
_1911
Dsui_1912: Dsui_1912 - response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain protein, at 2,014,614 to 2,015,177
_1912
Dsui_1913: Dsui_1913 - signal transduction histidine kinase, at 2,015,179 to 2,016,441
_1913
Position (kb)
2013
2014
2015 Strain fitness (log2 ratio)
-1
0
1
2 at 2012.519 kb on + strand, within Dsui_1908 at 2012.704 kb on - strand at 2012.704 kb on - strand at 2012.724 kb on + strand at 2012.724 kb on + strand at 2013.264 kb on + strand, within Dsui_1910 at 2013.406 kb on - strand at 2013.443 kb on + strand at 2013.615 kb on - strand, within Dsui_1911 at 2013.807 kb on + strand at 2013.862 kb on + strand, within Dsui_1911 at 2014.025 kb on - strand, within Dsui_1911 at 2014.025 kb on - strand, within Dsui_1911 at 2014.100 kb on - strand, within Dsui_1911 at 2014.140 kb on + strand at 2014.208 kb on - strand, within Dsui_1911 at 2014.342 kb on + strand at 2014.396 kb on + strand at 2014.399 kb on - strand at 2014.409 kb on - strand at 2014.472 kb on - strand at 2014.507 kb on - strand at 2014.564 kb on - strand at 2014.833 kb on - strand at 2014.945 kb on + strand at 2015.068 kb on - strand, within Dsui_1912 at 2015.171 kb on - strand at 2015.260 kb on + strand at 2015.430 kb on + strand at 2015.450 kb on + strand, within Dsui_1913
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 2,012,519 + Dsui_1908 0.89 +0.0 2,012,704 - -0.0 2,012,704 - -0.6 2,012,724 + +0.7 2,012,724 + +0.3 2,013,264 + Dsui_1910 0.66 -1.2 2,013,406 - +1.0 2,013,443 + -0.6 2,013,615 - Dsui_1911 0.11 +0.4 2,013,807 + -0.2 2,013,862 + Dsui_1911 0.37 -0.8 2,014,025 - Dsui_1911 0.54 +0.2 2,014,025 - Dsui_1911 0.54 +1.9 2,014,100 - Dsui_1911 0.62 -0.0 2,014,140 + +2.4 2,014,208 - Dsui_1911 0.74 +0.4 2,014,342 + +2.4 2,014,396 + +0.1 2,014,399 - +0.4 2,014,409 - +1.3 2,014,472 - +0.4 2,014,507 - +0.7 2,014,564 - +1.2 2,014,833 - +1.4 2,014,945 + +0.4 2,015,068 - Dsui_1912 0.80 +2.0 2,015,171 - +0.1 2,015,260 + -0.8 2,015,430 + +1.4 2,015,450 + Dsui_1913 0.21 -0.8
Or see this region's nucleotide sequence